Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4788 and Atu4789 are separated by 316 nucleotidesAtu4789 and Atu4790 are separated by 10 nucleotidesAtu4790 and Atu8097 overlap by 4 nucleotidesAtu8097 and Atu4791 are separated by 36 nucleotides Atu4788: Atu4788 - hypothetical protein, at 1,960,559 to 1,961,638 Atu4788 Atu4789: Atu4789 - GDP-mannose 4,6-dehydratase, at 1,961,955 to 1,963,025 Atu4789 Atu4790: Atu4790 - GDP-fucose synthetase, at 1,963,036 to 1,964,004 Atu4790 Atu8097: Atu8097 - hypothetical protein, at 1,964,001 to 1,965,950 Atu8097 Atu4791: Atu4791 - hypothetical protein, at 1,965,987 to 1,966,475 Atu4791
Group Condition Atu4788 Atu4789 Atu4790 Atu8097 Atu4791
nitrogen source DL-2-Aminobutyric (N) -0.6 -0.4 +0.0 -0.3 -0.5
stress R2A with Chloride 800 mM -0.2 -0.3 -0.1 -0.2 -0.7
stress R2A with Nickel (II) chloride 0.05 mM -0.1 -0.3 -0.2 -0.2 -0.6
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.0 -0.4 -0.1 -0.8
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.4 -0.1 -0.2 -0.5
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.0 -0.8 +0.2 -0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +0.0 +0.2 -1.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 +0.4 +0.2 -0.8
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.2 -0.2 +0.0 +0.9
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 +0.4 -0.2 +0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.7 -0.3 +0.3 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.2 -0.3 +0.3 +0.9
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 -0.3 +0.1 +0.5
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 +0.2 +0.4 +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.0 +0.1 +0.0 +1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.4 +0.3 +0.3 -0.3
lb LB +0.1 +0.4 +0.3 +0.3 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.3 +0.3 +0.3 -0.0
lb LB +0.3 +0.2 +0.3 +0.3 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.3 +0.2 +0.4 +0.3
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.3 +0.3 +0.3 +0.3 +0.2
carbon source L-(+)-Erythrulose (C) +0.4 +0.3 +0.4 +0.3 +0.2
lb_sorghum_leaf LB_sorghum_leaf +0.2 +0.3 +0.5 +0.4 +0.2
lb_arabidopsis_leaf LB_arabidopsis_leaf +0.3 +0.3 +0.3 +0.4 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 +0.3 +0.5 +0.3 +0.3
stress Pyrogallol 0.5 mM +0.3 +0.3 +0.3 +0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.3 +0.4 +0.3 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.5 +0.4 +0.4 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.5 +0.3 +0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.2 +0.5 +0.7
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