Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4771 and Atu4772 are separated by 1 nucleotidesAtu4772 and Atu4773 are separated by 324 nucleotidesAtu4773 and Atu4774 are separated by 64 nucleotidesAtu4774 and Atu4775 overlap by 8 nucleotides Atu4771: Atu4771 - oxalate decarboxylase, at 1,939,931 to 1,941,178 Atu4771 Atu4772: Atu4772 - hypothetical protein, at 1,941,180 to 1,941,644 Atu4772 Atu4773: Atu4773 - two component response regulator, at 1,941,969 to 1,942,343 Atu4773 Atu4774: Atu4774 - two component response regulator, at 1,942,408 to 1,943,064 Atu4774 Atu4775: Atu4775 - two component sensor kinase, at 1,943,057 to 1,944,637 Atu4775
Group Condition Atu4771 Atu4772 Atu4773 Atu4774 Atu4775
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -4.1 +0.1 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 -0.2 -4.2 -0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.4 -0.1 -3.8 +0.1 -0.3
carbon source Adipic (C) +0.0 -0.2 -4.3 -0.0 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.1 -4.3 +0.0 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 -0.5 -4.0 +0.1 -0.1
carbon source Ethyl benzoate (C) -0.1 +0.1 -4.3 +0.0 +0.0
carbon source Asolectin from soybean (C) +0.1 -0.2 -4.1 -0.0 -0.0
carbon source D-Galacturonic Acid (C) +0.0 -0.1 -4.3 +0.0 +0.1
carbon source L-Sorbose (C) -0.2 -0.1 -4.1 -0.0 +0.1
carbon source Ferulic Acid (C) +0.0 +0.1 -4.3 -0.1 +0.1
carbon source anthranilamide (C) +0.0 -0.0 -4.2 -0.1 +0.1
carbon source D-Galacturonic Acid (C) +0.0 -0.1 -4.3 -0.0 +0.2
carbon source 1,5-Pentanediol (C) -0.1 +0.1 -4.2 -0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.3 -3.8 -0.0 +0.1
stress R2A with Polymyxin B sulfate 0.00075 mM -0.0 -0.1 -4.2 +0.1 +0.1
carbon source L-ascorbate (C) +0.1 +0.1 -4.3 -0.0 +0.1
carbon source L-ascorbate (C) +0.1 +0.0 -4.3 +0.0 +0.1
carbon source Dihydroxyacetone (C) +0.1 +0.2 -4.3 +0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.3 -4.5 +0.2 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 +0.6 -3.7 -0.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.1 -4.3 +0.6 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +0.5 -3.5 +0.3 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 -0.1 -3.4 +0.2 +0.5
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.8 -3.5 +0.3 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.3 -3.0 +0.7 -0.1
stress Chloramphenicol 12.5 ug/mL +0.3 -1.2 +2.9 +0.2 +0.1
phage AgroPhage_E10 -0.7 -0.3 +4.2 -0.0 +0.1
phage AgroPhage_F10 +0.0 -0.4 +4.1 -0.0 +0.0
stress R2A with Vancomycin 0.009 mM -0.2 +0.4 +4.4 +0.2 +0.0
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