Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4732 and Atu4733 are separated by 21 nucleotidesAtu4733 and Atu4734 are separated by 363 nucleotidesAtu4734 and Atu4736 are separated by 408 nucleotidesAtu4736 and Atu4737 are separated by 198 nucleotides Atu4732: Atu4732 - fimbrial chaperone, at 1,898,306 to 1,899,022 Atu4732 Atu4733: Atu4733 - hypothetical protein, at 1,899,044 to 1,899,541 Atu4733 Atu4734: Atu4734 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 1,899,905 to 1,902,694 Atu4734 Atu4736: Atu4736 - methyl-accepting chemotaxis protein, at 1,903,103 to 1,905,046 Atu4736 Atu4737: Atu4737 - hypothetical protein, at 1,905,245 to 1,905,427 Atu4737
Group Condition Atu4732 Atu4733 Atu4734 Atu4736 Atu4737
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.6 -0.5 +0.0 -0.5
stress R2A with Vancomycin 0.009 mM -0.1 -0.0 -1.1 +0.1 -0.0
phage AgroPhage_C04 +0.4 -0.2 +0.1 -0.1 -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.3 -0.2 -0.2 -0.7
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.6 -0.5 +0.0 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 -0.3 -0.4 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.0 -0.7 +0.2 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.5 -0.7 -0.0 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.9 -0.3 -0.1 -0.0
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.3 -0.3 -0.2 +0.6
phage AgroPhage_C10 +0.3 +0.5 -0.3 -0.2 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.2 -0.4 +0.0 +0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.5 -0.3 -0.1 +0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.9 -0.3 -0.0 -0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 -0.5 +0.3 +0.2
phage AgroPhage_E10 +0.2 +0.1 -0.2 -0.3 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.9 -0.1 -0.1 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.6 -0.3 -0.1 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.2 +0.4 -0.0 -0.3 +0.6
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 -0.1 +0.6 +0.3
phage AgroPhage_H03 +0.4 +0.4 +0.0 -0.1 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.1 -0.0 +0.3 +0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.3 +0.4 +0.3 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.2 +0.3 -0.0 +0.2
phage AgroPhage_B07 +0.4 +0.6 -0.0 -0.0 +0.6
nitrogen source Orotic (N) +0.6 +0.6 +0.2 +0.0 +0.2
phage AgroPhage_E04 +0.4 +0.4 +0.3 -0.0 +0.5
stress R2A with Cobalt chloride 0.02 mM +0.4 +0.2 +1.5 +0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.9 -0.1 +0.4 +1.4
stress R2A with tungstate 375 mM -0.2 -0.2 +5.9 +0.0 +0.0
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