Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4731 and Atu4732 overlap by 29 nucleotidesAtu4732 and Atu4733 are separated by 21 nucleotidesAtu4733 and Atu4734 are separated by 363 nucleotidesAtu4734 and Atu4736 are separated by 408 nucleotides Atu4731: Atu4731 - fimbrial usher protein, at 1,895,896 to 1,898,334 Atu4731 Atu4732: Atu4732 - fimbrial chaperone, at 1,898,306 to 1,899,022 Atu4732 Atu4733: Atu4733 - hypothetical protein, at 1,899,044 to 1,899,541 Atu4733 Atu4734: Atu4734 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 1,899,905 to 1,902,694 Atu4734 Atu4736: Atu4736 - methyl-accepting chemotaxis protein, at 1,903,103 to 1,905,046 Atu4736
Group Condition Atu4731 Atu4732 Atu4733 Atu4734 Atu4736
stress Streptomycin 200 ug/mL -0.1 -0.1 -0.2 -0.9 -0.1
stress R2A with Vancomycin 0.009 mM -0.0 -0.1 -0.0 -1.1 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 -0.6 -0.5 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 +0.5 -0.7 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 -0.1 -0.6 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.3 -0.0 -0.7 +0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.2 +0.6 -0.5 +0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.5 +0.9 -0.3 -0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 +0.2 -0.1 +0.6
carbon source L-ascorbate (C) +0.4 +0.2 +0.3 -0.5 -0.1
phage AgroPhage_C10 +0.2 +0.3 +0.5 -0.3 -0.2
nophagecontrol No phage control +0.3 +0.4 +0.2 -0.1 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 +0.9 -0.3 -0.0
carbon source L-ascorbate (C) +0.5 +0.4 +0.2 -0.2 -0.2
phage AgroPhage_D10 +0.4 +0.3 +0.4 -0.2 +0.2
nophagecontrol No phage control +0.5 +0.2 +0.5 +0.0 -0.1
phage AgroPhage_D07 +0.5 +0.2 +0.5 +0.0 -0.1
phage AgroPhage_F03 +0.4 +0.6 +0.2 +0.0 -0.1
phage AgroPhage_A07 +0.4 +0.5 +0.4 +0.0 -0.2
phage AgroPhage_D04 +0.4 +0.6 +0.3 +0.1 -0.2
phage AgroPhage_E04 +0.1 +0.4 +0.4 +0.3 -0.0
phage AgroPhage_B07 +0.4 +0.4 +0.6 -0.0 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 +0.9 -0.1 +0.4
phage AgroPhage_F10 +0.5 +0.4 +0.3 +0.2 -0.0
stress R2A with Magnesium sulfate 400 mM +0.5 +0.4 +0.5 -0.0 +0.0
nitrogen source Orotic (N) +0.4 +0.5 +0.4 +0.0 +0.1
nitrogen source Orotic (N) +0.5 +0.6 +0.6 +0.2 +0.0
stress R2A with Cobalt chloride 0.02 mM +0.1 +0.4 +0.2 +1.5 +0.1
stress R2A with tungstate 375 mM +0.0 -0.2 -0.2 +5.9 +0.0
stress R2A with tungstate 375 mM -0.1 +0.1 -0.1 +9.5 +0.1
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