Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4719 and Atu4720 are separated by 67 nucleotidesAtu4720 and Atu4721 are separated by 76 nucleotidesAtu4721 and Atu4722 are separated by 21 nucleotidesAtu4722 and Atu4723 are separated by 4 nucleotides Atu4719: Atu4719 - dipeptide ABC transporter substrate-binding protein, at 1,881,113 to 1,882,621 Atu4719 Atu4720: Atu4720 - dipeptide ABC transporter permease, at 1,882,689 to 1,883,636 Atu4720 Atu4721: Atu4721 - dipeptide ABC transporter permease, at 1,883,713 to 1,884,519 Atu4721 Atu4722: Atu4722 - gamma-glutamyltranspeptidase, at 1,884,541 to 1,886,325 Atu4722 Atu4723: Atu4723 - ABC transporter permease, at 1,886,330 to 1,888,141 Atu4723
Group Condition Atu4719 Atu4720 Atu4721 Atu4722 Atu4723
phage AgroPhage_C10 -0.4 -0.1 -0.3 -0.1 -0.6
phage AgroPhage_C04 -0.6 -0.1 -0.4 -0.2 -0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.0 -0.2 -0.2 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.4 +0.1 -0.2 -0.1
phage AgroPhage_D07 -0.1 +0.2 -0.5 -0.0 -0.4
phage AgroPhage_H04 -0.0 -0.5 -0.1 +0.1 -0.1
phage AgroPhage_D04 -0.2 -0.2 -0.1 +0.2 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.4 -0.2 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 +0.3 -0.4 -0.1 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.0 -0.2 +0.3 +0.0
stress R2A with Nitrofurantoin 0.4 mg/mL +0.2 -0.5 -0.1 -0.1 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 -0.2 +0.1 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.4 -0.0 +0.0 +0.5
stress Chloramphenicol 12.5 ug/mL -0.2 -0.2 +0.4 +0.2 -0.1
Atjh2 +0.1 +0.3 -0.1 +0.1 -0.4
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.2 +0.5 +0.1 -0.1 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -0.3 -0.1 +0.6
Atjh14 +0.2 -0.4 +0.2 +0.1 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.0 +0.3 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +0.3 -0.2 -0.2 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.6 -0.0 +0.0 -0.1
stress R2A with Vancomycin 0.009 mM -0.1 -0.2 +0.3 +0.1 +0.4
phage phage 100.2 +0.1 -0.2 +0.3 +0.0 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.2 +0.5 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.8 -0.2 -0.1 +0.3
nitrogen source DL-2-Aminobutyric (N) +0.1 -0.1 +0.6 -0.0 +0.2
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.4 +0.2 +0.0 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.3 +0.2 +0.1 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.0 +0.1 +0.4 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 +0.2 +0.1 +0.5
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