Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4673 and Atu4674 are separated by 289 nucleotidesAtu4674 and Atu4675 are separated by 109 nucleotidesAtu4675 and Atu4676 are separated by 67 nucleotidesAtu4676 and Atu4677 are separated by 61 nucleotides Atu4673: Atu4673 - cell division protein FtsZ, at 1,832,465 to 1,833,427 Atu4673 Atu4674: Atu4674 - GntR family transcriptional regulator, at 1,833,717 to 1,834,415 Atu4674 Atu4675: Atu4675 - dihydrodipicolinate synthase, at 1,834,525 to 1,835,490 Atu4675 Atu4676: Atu4676 - malate dehydrogenase, at 1,835,558 to 1,836,595 Atu4676 Atu4677: Atu4677 - hypothetical protein, at 1,836,657 to 1,836,917 Atu4677
Group Condition Atu4673 Atu4674 Atu4675 Atu4676 Atu4677
carbon source D-Saccharic potassium salt (C) -0.6 -3.6 +0.1 -0.3 -1.7
carbon source D-Saccharic potassium salt (C) -0.0 -4.3 -0.1 -0.8 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.5 +0.0 -0.3 -3.9
carbon source L-ascorbate (C) -0.2 -3.5 -0.2 -0.1 -0.1
nitrogen source 3-aminobutyric (N) -0.3 -3.1 -0.1 -0.1 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.5 -0.7 -0.0 -2.0
nitrogen source 3-aminobutyric (N) -0.1 -3.0 +0.2 +0.0 -0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 -1.1 +0.1 -0.3 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.3 -0.0 -0.3 -3.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 -0.9 -0.2 +0.2 -0.8
nitrogen source L-Valine (N) -0.1 -2.2 -0.2 -0.1 +0.3
carbon source D-Galacturonic Acid (C) +0.2 -2.2 +0.1 -0.0 -0.3
nitrogen source L-Pipecolic Acid (N) -0.1 -2.2 -0.2 +0.1 +0.7
carbon source Ferulic Acid (C) -0.1 -2.0 +0.2 -0.1 +0.6
carbon source Xylitol (C) +0.0 -2.3 +0.4 +0.1 +0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +2.3 +0.2 -0.0 -2.5
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.8 -0.3 -0.3 +2.8
stress R2A with Vancomycin 0.009 mM +1.7 -1.4 +0.4 +0.2 +0.5
carbon source L-Alanine (C) -0.2 +2.2 +0.1 +0.0 -0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 +1.7 -0.1 +0.6 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +2.2 +0.4 -0.0 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +1.6 -0.2 +0.3 +0.8
stress R2A with Vancomycin 0.009 mM +2.3 -1.2 +0.3 -0.0 +1.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 +1.6 +0.2 -0.1 +0.9
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +2.8 +0.7 -0.2 -0.4
stress R2A with tungstate 375 mM -0.0 +3.2 +0.2 -0.1 +0.6
nitrogen source 4-Aminobutyric (N) -0.0 +3.7 +0.1 -0.0 +0.2
nitrogen source 4-Aminobutyric (N) +0.1 +3.9 +0.1 -0.1 +0.6
carbon source 4-Aminobutyric (C) +0.1 +4.5 -0.1 +0.2 +0.9
carbon source 4-Aminobutyric (C) -0.0 +4.7 -0.2 +0.0 +1.2
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