Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4661 and Atu4662 are separated by 143 nucleotidesAtu4662 and Atu4663 are separated by 1 nucleotidesAtu4663 and Atu4664 are separated by 13 nucleotidesAtu4664 and Atu4665 are separated by 22 nucleotides Atu4661: Atu4661 - alpha-galactoside ABC transporter substrate-binding protein, at 1,817,343 to 1,819,430 Atu4661 Atu4662: Atu4662 - oligopeptide ABC transporter permease, at 1,819,574 to 1,820,581 Atu4662 Atu4663: Atu4663 - oligopeptide ABC transporter permease, at 1,820,583 to 1,821,719 Atu4663 Atu4664: Atu4664 - oligopeptide ABC transporter ATPase, at 1,821,733 to 1,823,400 Atu4664 Atu4665: Atu4665 - alpha-galactosidase, at 1,823,423 to 1,824,796 Atu4665
Group Condition Atu4661 Atu4662 Atu4663 Atu4664 Atu4665
carbon source D-Raffinose (C) -5.2 -5.8 -6.7 -5.4 -6.4
carbon source D-Raffinose (C) -5.5 -5.6 -5.8 -5.1 -4.9
carbon source Melibiose (C) -4.9 -4.7 -5.4 -4.6 -5.4
carbon source Stachyose (C) -4.5 -5.6 -5.7 -4.3 -4.8
carbon source Melibiose (C) -4.8 -4.9 -4.9 -5.0 -4.9
carbon source Stachyose (C) -4.9 -4.7 -4.8 -3.7 -5.7
carbon source Methyl-B-D-galactopyranoside (C) -0.4 -0.4 -0.6 -0.6 +0.0
carbon source Asolectin from soybean (C) -0.5 -0.1 -0.3 -0.2 -0.6
phage AgroPhage_E10 -0.3 -0.7 -0.0 -0.2 -0.5
phage AgroPhage_D10 -0.2 -0.1 -0.4 -0.4 -0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.4 -0.5 -0.2 +0.0
carbon source Beta-Lactose (C) +0.0 -0.0 -0.1 +0.1 -1.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 -0.1 -0.5 -0.5
carbon source Beta-Lactose (C) -0.0 -0.3 +0.0 +0.1 -1.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.2 -0.7 -0.3 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.2 -0.3 -0.1 -0.6
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.5 -0.4 +0.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 -0.9 -0.2 +0.5
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.4 -0.3 -0.1 +0.3
nophagecontrol No phage control -0.1 -0.4 -0.3 -0.1 +0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.5 -0.4 -0.3 -0.5
nitrogen source DL-2-Aminobutyric (N) -0.1 -0.6 +0.8 -0.2 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 -0.1 -0.2 +0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 +0.4 -0.3 +0.6
phage AgroPhage_C04 -0.2 +0.3 -0.4 +0.1 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 +0.5 +0.1 +0.4
phage AgroPhage_C10 -0.1 -0.0 +0.3 -0.1 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.7 +0.2 +0.5 -0.1
carbon source methyl-beta-L-arabinopyranoside (C) +0.3 +0.8 +0.6 +0.8 +0.1
carbon source methyl-beta-L-arabinopyranoside (C) +0.4 +1.0 +0.5 +0.8 +0.2
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