Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4659 and Atu4660 are separated by 197 nucleotidesAtu4660 and Atu4661 are separated by 104 nucleotidesAtu4661 and Atu4662 are separated by 143 nucleotidesAtu4662 and Atu4663 are separated by 1 nucleotides Atu4659: Atu4659 - AraC family transcriptional regulator, at 1,814,687 to 1,815,574 Atu4659 Atu4660: Atu4660 - alpha-galactosidase, at 1,815,772 to 1,817,238 Atu4660 Atu4661: Atu4661 - alpha-galactoside ABC transporter substrate-binding protein, at 1,817,343 to 1,819,430 Atu4661 Atu4662: Atu4662 - oligopeptide ABC transporter permease, at 1,819,574 to 1,820,581 Atu4662 Atu4663: Atu4663 - oligopeptide ABC transporter permease, at 1,820,583 to 1,821,719 Atu4663
Group Condition Atu4659 Atu4660 Atu4661 Atu4662 Atu4663
carbon source D-Raffinose (C) -5.6 -5.8 -5.2 -5.8 -6.7
carbon source D-Raffinose (C) -5.2 -5.1 -5.5 -5.6 -5.8
carbon source Stachyose (C) -4.9 -4.3 -4.5 -5.6 -5.7
carbon source Melibiose (C) -5.5 -4.2 -4.8 -4.9 -4.9
carbon source Melibiose (C) -4.4 -4.8 -4.9 -4.7 -5.4
carbon source Stachyose (C) -4.5 -4.1 -4.9 -4.7 -4.8
carbon source Methyl-B-D-galactopyranoside (C) -0.4 -0.5 -0.4 -0.4 -0.6
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 -0.3 -0.0 -0.6 -0.4
carbon source Methyl-B-D-galactopyranoside (C) -0.3 -0.5 -0.5 -0.0 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.2 -0.1 -0.1 -0.8
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.3 +0.1 -0.3 -0.1
phage AgroPhage_E10 +0.0 -0.2 -0.3 -0.7 -0.0
carbon source methyl-beta-L-arabinopyranoside (C) -1.3 -1.5 +0.3 +0.8 +0.6
carbon source methyl-beta-L-arabinopyranoside (C) -1.1 -1.8 +0.4 +1.0 +0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.2 -0.1 -0.5 +0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.2 +0.0 -0.3 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 +0.1 -0.2 -0.9
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.1 -0.1 +0.1 -0.7
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.5 +0.0 -0.5 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.4 +0.1 -0.4 +0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.7 +0.1 -0.2 -0.4
nitrogen source DL-2-Aminobutyric (N) -0.1 +0.0 -0.1 -0.6 +0.8
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 -0.2 +0.0 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.2 -0.1 -0.3 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 +0.4 +0.5 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.2 -0.4 -0.3
phage AgroPhage_C04 +0.5 +0.1 -0.2 +0.3 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.1 +0.0 +0.5 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 +0.2 -0.2 -0.2 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.2 +0.1 +0.7 +0.2
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