Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4651 and Atu4652 are separated by 148 nucleotidesAtu4652 and Atu4653 overlap by 4 nucleotidesAtu4653 and Atu4654 are separated by 17 nucleotidesAtu4654 and Atu4655 are separated by 246 nucleotides Atu4651: Atu4651 - argininosuccinate lyase, at 1,804,754 to 1,806,124 Atu4651 Atu4652: Atu4652 - sugar ABC transporter permease, at 1,806,273 to 1,807,115 Atu4652 Atu4653: Atu4653 - sugar ABC transporter permease, at 1,807,112 to 1,808,053 Atu4653 Atu4654: Atu4654 - sugar ABC transporter substrate-binding protein, at 1,808,071 to 1,809,336 Atu4654 Atu4655: Atu4655 - ROK family transcriptional regulator, at 1,809,583 to 1,810,809 Atu4655
Group Condition Atu4651 Atu4652 Atu4653 Atu4654 Atu4655
stress Chloramphenicol 12.5 ug/mL -0.6 -0.1 -0.2 -0.3 -0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 -0.1 +0.1 -0.5
carbon source D-Saccharic potassium salt (C) +0.1 +0.1 +0.1 -0.2 -1.0
phage AgroPhage_C04 -0.1 -0.1 -0.6 +0.2 -0.2
carbon source NAG (C) -0.1 +0.2 -0.2 -0.1 -0.6
phage AgroPhage_E10 -0.1 -0.5 +0.2 -0.3 -0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 +0.3 -0.2 -0.4
carbon source D-Saccharic potassium salt (C) -0.0 +0.3 +0.0 +0.2 -1.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 -0.3 +0.2 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.3 -0.2 -0.1 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.2 -0.2 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.1 -0.1 -0.0 +0.6
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.1 +0.1 +0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -0.1 -0.3 -0.2 -0.2 +1.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.8 -0.1 -0.2 -0.4
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 -0.2 +0.2 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 -0.3 +0.1 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.0 -0.1 -0.2 +0.0 +0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.0 -0.0 +0.1 -0.2 +0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.2 -0.2 -0.1 -0.1 +0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.2 +0.3 +0.2 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.2 -0.0 +0.0 -0.1 +0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.0 -0.1 +0.3 -0.1 +1.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.3 +0.1 +0.4 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.5 +0.4 +0.2 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.0 +0.2 +0.1 -0.0 +1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -0.0 +0.0 +0.2 +0.1 +1.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.7 +1.1 +0.0 -0.1
carbon source D-Glucosamine Hydrochloride (C) +0.5 +0.5 +0.4 +0.8 -0.2
carbon source D-Glucosamine Hydrochloride (C) +0.6 +0.5 +0.7 +1.0 -0.1
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