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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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500 nt
Atu4651 and Atu4652 are separated by 148 nucleotides
Atu4652 and Atu4653 overlap by 4 nucleotides
Atu4653 and Atu4654 are separated by 17 nucleotides
Atu4654 and Atu4655 are separated by 246 nucleotides
Atu4651: Atu4651 - argininosuccinate lyase, at 1,804,754 to 1,806,124
Atu4651
Atu4652: Atu4652 - sugar ABC transporter permease, at 1,806,273 to 1,807,115
Atu4652
Atu4653: Atu4653 - sugar ABC transporter permease, at 1,807,112 to 1,808,053
Atu4653
Atu4654: Atu4654 - sugar ABC transporter substrate-binding protein, at 1,808,071 to 1,809,336
Atu4654
Atu4655: Atu4655 - ROK family transcriptional regulator, at 1,809,583 to 1,810,809
Atu4655
Group
Condition
Atu4651
Atu4652
Atu4653
Atu4654
Atu4655
stress
Chloramphenicol 12.5 ug/mL
-0.6
-0.1
-0.2
-0.3
-0.6
in planta
Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.1
-0.4
-0.1
+0.1
-0.5
carbon source
D-Saccharic potassium salt (C)
+0.1
+0.1
+0.1
-0.2
-1.0
phage
AgroPhage_C04
-0.1
-0.1
-0.6
+0.2
-0.2
carbon source
NAG (C)
-0.1
+0.2
-0.2
-0.1
-0.6
phage
AgroPhage_E10
-0.1
-0.5
+0.2
-0.3
-0.0
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.2
-0.1
+0.3
-0.2
-0.4
carbon source
D-Saccharic potassium salt (C)
-0.0
+0.3
+0.0
+0.2
-1.2
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.2
+0.2
-0.3
+0.2
-0.4
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.5
-0.3
-0.2
-0.1
-0.2
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.1
+0.3
+0.2
-0.2
-0.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.4
-0.1
-0.1
-0.0
+0.6
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.4
-0.1
+0.1
+0.2
+0.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
-0.1
-0.3
-0.2
-0.2
+1.0
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.3
+0.8
-0.1
-0.2
-0.4
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.2
+0.2
-0.2
+0.2
+0.4
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.3
+0.4
-0.3
+0.1
+0.0
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
+0.0
-0.1
-0.2
+0.0
+0.7
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
+0.0
-0.0
+0.1
-0.2
+0.8
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
+0.2
-0.2
-0.1
-0.1
+0.8
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.0
-0.2
+0.3
+0.2
+0.4
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
+0.2
-0.0
+0.0
-0.1
+0.8
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
+0.0
-0.1
+0.3
-0.1
+1.0
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.3
+0.3
+0.1
+0.4
-0.1
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.0
+0.5
+0.4
+0.2
+0.0
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
-0.0
+0.2
+0.1
-0.0
+1.0
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
-0.0
+0.0
+0.2
+0.1
+1.2
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.1
+0.7
+1.1
+0.0
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.5
+0.5
+0.4
+0.8
-0.2
carbon source
D-Glucosamine Hydrochloride (C)
+0.6
+0.5
+0.7
+1.0
-0.1
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