Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4589 and Atu4590 are separated by 48 nucleotidesAtu4590 and Atu4591 are separated by 159 nucleotidesAtu4591 and Atu4592 are separated by 98 nucleotidesAtu4592 and Atu4593 are separated by 14 nucleotides Atu4589: Atu4589 - transmembrane transport protein, at 1,736,276 to 1,736,557 Atu4589 Atu4590: Atu4590 - oxidoreductase, at 1,736,606 to 1,737,652 Atu4590 Atu4591: Atu4591 - LysR family transcriptional regulator, at 1,737,812 to 1,738,717 Atu4591 Atu4592: Atu4592 - hypothetical protein, at 1,738,816 to 1,739,610 Atu4592 Atu4593: Atu4593 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 1,739,625 to 1,740,473 Atu4593
Group Condition Atu4589 Atu4590 Atu4591 Atu4592 Atu4593
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 -0.3 +0.0 -0.3 -0.2
phage AgroPhage_E10 +0.0 +0.0 -1.0 -0.8 -0.2
No phage control -0.6 -0.5 -0.2 -0.2 -0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.2 -0.1 -0.3 +0.2 -0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.3 +0.1 -0.0 -0.3
phage AgroPhage_H10 -1.1 -0.1 -0.0 +0.2 -0.1
phage AgroPhage_A05 -0.1 -0.2 -0.3 -0.7 +0.1
lb LB -0.5 -0.1 +0.2 -0.3 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.3 +0.2 +0.1 -0.2
carbon source D-Saccharic potassium salt (C) +0.4 -0.2 +0.1 -0.2 -0.5
Atjh10 +0.7 -0.0 -0.3 -0.5 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 +0.1 +0.1 +0.5 -0.2
stress Chloramphenicol 12.5 ug/mL -0.4 -0.1 -0.4 +0.7 +0.1
Atjh15 +0.7 -0.1 -0.5 -0.3 +0.3
in planta Bethi_Library_OD0.01 -0.6 +0.1 +0.3 +0.2 +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.3 -0.4 -0.4 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.2 +0.0 -0.4 -0.2
phage AgroPhage_D04 +0.7 -0.2 +0.0 -0.2 +0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 -0.3 +0.1 -0.1 +0.4
nitrogen source DL-2-Aminobutyric (N) +0.7 +0.8 -0.1 -0.0 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 +0.5 +0.3 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 -0.3 +0.5 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.3 -0.3 +0.5 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.1 -0.3 +0.2 -0.1 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.2 +0.4 +1.3 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.5 +0.3 +0.2 +0.3 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.0 +0.1 +0.8 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.1 +0.1 +0.5 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.6 +0.1 -0.1 +0.6 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.1 +0.3 +0.5 +0.6
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