Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4588 and Atu4589 are separated by 45 nucleotidesAtu4589 and Atu4590 are separated by 48 nucleotidesAtu4590 and Atu4591 are separated by 159 nucleotidesAtu4591 and Atu4592 are separated by 98 nucleotides Atu4588: Atu4588 - sodium bile acid symporter family protein, at 1,735,607 to 1,736,230 Atu4588 Atu4589: Atu4589 - transmembrane transport protein, at 1,736,276 to 1,736,557 Atu4589 Atu4590: Atu4590 - oxidoreductase, at 1,736,606 to 1,737,652 Atu4590 Atu4591: Atu4591 - LysR family transcriptional regulator, at 1,737,812 to 1,738,717 Atu4591 Atu4592: Atu4592 - hypothetical protein, at 1,738,816 to 1,739,610 Atu4592
Group Condition Atu4588 Atu4589 Atu4590 Atu4591 Atu4592
phage AgroPhage_E10 -0.7 +0.0 +0.0 -1.0 -0.8
phage AgroPhage_F03 -0.8 -0.4 -0.1 -0.3 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -1.0 -0.3 +0.0 -0.3
nophagecontrol No phage control -0.3 -0.8 -0.1 -0.1 -0.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 -0.9 +0.3 +0.2 +0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -1.2 -0.1 -0.3 +0.2
Atjh10 -0.7 +0.2 -0.1 -0.2 -0.3
No phage control +0.5 -0.6 -0.5 -0.2 -0.2
phage AgroPhage_H10 +0.3 -1.1 -0.1 -0.0 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.9 -0.2 -0.1 +0.1
Atjh15 -0.4 +0.7 -0.1 -0.5 -0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.6 +0.3 -0.4 -0.4
phage AgroPhage_E04 +0.7 -0.2 -0.4 +0.0 -0.4
nophagecontrol No phage control +0.4 -0.7 -0.1 +0.2 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.8 +0.1 +0.1 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.8 -0.3 +0.1 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.4 -0.1 -0.2 +0.1
stress Chloramphenicol 12.5 ug/mL +0.6 -0.4 -0.1 -0.4 +0.7
Atjh2 +0.4 +0.7 -0.2 -0.2 -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +1.1 -0.3 +0.2 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.4 -0.2 +0.5 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 +0.5 -0.3 +0.5
carbon source L-ascorbate (C) -0.4 +0.7 +0.1 +0.0 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.5 +0.3 -0.3 +0.5
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.0 -0.2 -0.1 +0.2 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.6 +0.2 +0.4 +1.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.6 +0.1 +0.3 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.3 +0.5 +0.3 +0.2 +0.3
nitrogen source DL-2-Aminobutyric (N) +1.2 +0.7 +0.8 -0.1 -0.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +1.6 +0.1 -0.1 +0.6
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