Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4587 and Atu4588 are separated by 78 nucleotidesAtu4588 and Atu4589 are separated by 45 nucleotidesAtu4589 and Atu4590 are separated by 48 nucleotidesAtu4590 and Atu4591 are separated by 159 nucleotides Atu4587: Atu4587 - hypothetical protein, at 1,734,728 to 1,735,528 Atu4587 Atu4588: Atu4588 - sodium bile acid symporter family protein, at 1,735,607 to 1,736,230 Atu4588 Atu4589: Atu4589 - transmembrane transport protein, at 1,736,276 to 1,736,557 Atu4589 Atu4590: Atu4590 - oxidoreductase, at 1,736,606 to 1,737,652 Atu4590 Atu4591: Atu4591 - LysR family transcriptional regulator, at 1,737,812 to 1,738,717 Atu4591
Group Condition Atu4587 Atu4588 Atu4589 Atu4590 Atu4591
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.1 -1.2 -0.1 -0.3
stress R2A with sodium fluoride 0.2 mM -0.4 -0.6 -0.8 -0.0 -0.1
phage AgroPhage_E10 -0.2 -0.7 +0.0 +0.0 -1.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.3 -0.6 -0.3 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.6 +0.0 -0.3 +0.1
phage AgroPhage_H10 -0.3 +0.3 -1.1 -0.1 -0.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -1.1 -0.9 +0.3 +0.2
stress R2A with tungstate 375 mM -0.8 +0.1 +0.5 -0.1 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.6 +0.4 +0.2 -0.1
No phage control +0.2 +0.5 -0.6 -0.5 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.2 -0.6 +0.0 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.5 -0.9 -0.2 -0.1
Atjh15 -0.1 -0.4 +0.7 -0.1 -0.5
phage AgroPhage_E04 -0.4 +0.7 -0.2 -0.4 +0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 +0.6 +0.3 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +0.5 +0.2 -0.2 +0.1
stress Chloramphenicol 12.5 ug/mL +0.6 +0.6 -0.4 -0.1 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.8 -0.4 -0.1 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.4 +0.8 -0.3 +0.1
Atjh2 -0.2 +0.4 +0.7 -0.2 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 +1.1 -0.3 +0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +1.0 -0.2 -0.1 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 +0.4 -0.2 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.1 +0.9 -0.2 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.6 +0.5 -0.1 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.0 +0.3 +0.3 -0.1 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.7 +0.4 +0.3 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.7 +0.3 -0.0 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.7 +1.6 +0.1 -0.1
nitrogen source DL-2-Aminobutyric (N) +0.3 +1.2 +0.7 +0.8 -0.1
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