Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4582 and Atu4583 are separated by 104 nucleotidesAtu4583 and Atu4584 are separated by 164 nucleotidesAtu4584 and Atu4585 are separated by 46 nucleotidesAtu4585 and Atu4586 are separated by 85 nucleotides Atu4582: Atu4582 - ferredoxin, at 1,731,089 to 1,731,424 Atu4582 Atu4583: Atu4583 - superoxide dismutase, at 1,731,529 to 1,732,128 Atu4583 Atu4584: Atu4584 - TetR family transcriptional regulator, at 1,732,293 to 1,732,862 Atu4584 Atu4585: Atu4585 - hypothetical protein, at 1,732,909 to 1,733,436 Atu4585 Atu4586: Atu4586 - choloylglycine hydrolase family protein, at 1,733,522 to 1,734,589 Atu4586
Group Condition Atu4582 Atu4583 Atu4584 Atu4585 Atu4586
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.3 +0.1 -0.9 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.1 -0.2 -0.5 -1.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.2 +0.2 -0.3 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.3 -0.1 -0.9 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.0 -0.8 -0.1 +0.3 -0.6
Atjh14 +0.0 -1.5 -0.5 -0.1 +0.9
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 -0.2 -0.6 +0.0 -1.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.4 -0.1 -0.6 -1.0
nitrogen source DL-2-Aminobutyric (N) -0.1 -0.5 -0.3 -1.2 +1.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.5 -0.2 +0.5 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.2 +0.1 +0.3 -1.2
phage AgroPhage_C04 -0.3 +0.4 -0.4 +0.4 -0.3
stress R2A with tungstate 375 mM +0.0 +0.0 +0.2 -0.9 +0.6
Atjh15 -0.2 -0.8 +0.1 -0.0 +0.7
pH R2A pH 5.5 -0.4 +0.4 +0.3 +0.2 -0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +1.0 -0.2 -0.2 -0.3
phage AgroPhage_D04 +0.1 +0.8 +0.1 -0.2 -0.8
stress Chloramphenicol 12.5 ug/mL +0.1 -0.8 +0.0 +0.4 +0.5
phage AgroPhage_A07 +0.6 -0.2 +0.2 +0.5 -0.6
carbon source D-Saccharic potassium salt (C) -0.4 -0.4 +0.3 +0.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 +0.3 -0.2 -0.2 -0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.4 +0.0 +0.2 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.5 +0.4 +0.1 -0.8
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.3 -0.4 -0.4 +0.6
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 +0.4 +0.2 +0.6
phage AgroPhage_E04 +0.6 +0.3 +0.0 +0.9 -0.9
phage AgroPhage_F10 +0.5 -0.6 +0.4 +0.3 +0.4
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 -0.4 +0.3 +0.1 +0.3
stress R2A with Paraquat dichloride 0.75 mM +0.2 +1.2 +0.0 -0.4 +0.1
stress R2A with Tetracycline 0.002 mM +0.1 +0.7 -0.3 +0.3 +0.7
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