Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4575 and Atu4576 are separated by 133 nucleotidesAtu4576 and Atu4577 are separated by 343 nucleotidesAtu4577 and Atu4578 are separated by 111 nucleotidesAtu4578 and Atu4579 overlap by 4 nucleotides Atu4575: Atu4575 - AraC family transcriptional regulator, at 1,722,898 to 1,723,863 Atu4575 Atu4576: Atu4576 - ROK family transcriptional regulator, at 1,723,997 to 1,725,070 Atu4576 Atu4577: Atu4577 - ABC transporter substrate binding protein, at 1,725,414 to 1,726,406 Atu4577 Atu4578: Atu4578 - ABC transporter permease, at 1,726,518 to 1,727,603 Atu4578 Atu4579: Atu4579 - ABC transporter permease, at 1,727,600 to 1,729,285 Atu4579
Group Condition Atu4575 Atu4576 Atu4577 Atu4578 Atu4579
stress R2A with Phosphomycin 50 mM -0.1 -2.8 -0.2 +0.1 +0.1
stress R2A with Phosphomycin 50 mM +0.0 -2.6 -0.1 +0.1 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -1.4 +0.1 -0.4 +0.0
carbon source D-Saccharic potassium salt (C) -0.2 -1.8 +0.0 -0.1 -0.0
carbon source D-Saccharic potassium salt (C) +0.2 -2.1 -0.0 -0.1 -0.1
carbon source Uridine 5-monophosphate (C) -0.1 -1.4 -0.1 -0.0 +0.1
carbon source Uridine 5-monophosphate (C) -0.1 -1.8 +0.1 +0.2 +0.1
carbon source D-Ribose (C) -0.2 -1.3 +0.1 -0.1 +0.1
carbon source NAG (C) +0.0 -1.4 -0.1 +0.1 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.9 -0.3 -0.2 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -1.3 +0.2 -0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -1.0 +0.2 +0.1 -0.1
carbon source D-Galacturonic Acid (C) +0.1 -1.2 +0.1 -0.2 -0.0
carbon source D-Galacturonic Acid (C) +0.2 -1.3 +0.0 -0.1 +0.1
carbon source Ferulic Acid (C) +0.1 -1.3 -0.1 +0.3 -0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -1.0 +0.1 -0.0 +0.2
carbon source methyl-alpha-D-xylopyranoside (C) -0.2 -1.2 +0.1 +0.2 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.3 -0.9 -0.1 -0.3 +0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.8 -0.4 +0.0 +0.3 -0.0
carbon source L-Sorbose (C) +0.3 -0.9 -0.2 -0.1 +0.1
carbon source methyl-alpha-D-xylopyranoside (C) +0.2 -0.9 -0.1 +0.3 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 -0.6 -0.3 +0.1 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.5 +0.4 +0.2 +0.4
Atjh15 -0.4 +0.4 -0.1 +0.4 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 -0.2 +0.1 -0.3 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.5 +0.1 +0.5 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.4 -1.0 +0.1 +0.5 +0.2
stress R2A with Vancomycin 0.009 mM +0.2 +1.2 +0.2 -0.1 +0.2
Atjh2 +0.3 +0.7 +0.0 +0.4 +0.2
stress R2A with tungstate 375 mM +0.1 +5.2 +0.2 -0.2 -0.0
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