Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4574 and Atu4575 are separated by 54 nucleotidesAtu4575 and Atu4576 are separated by 133 nucleotidesAtu4576 and Atu4577 are separated by 343 nucleotidesAtu4577 and Atu4578 are separated by 111 nucleotides Atu4574: Atu4574 - dehydrogenase, at 1,722,094 to 1,722,843 Atu4574 Atu4575: Atu4575 - AraC family transcriptional regulator, at 1,722,898 to 1,723,863 Atu4575 Atu4576: Atu4576 - ROK family transcriptional regulator, at 1,723,997 to 1,725,070 Atu4576 Atu4577: Atu4577 - ABC transporter substrate binding protein, at 1,725,414 to 1,726,406 Atu4577 Atu4578: Atu4578 - ABC transporter permease, at 1,726,518 to 1,727,603 Atu4578
Group Condition Atu4574 Atu4575 Atu4576 Atu4577 Atu4578
stress R2A with Phosphomycin 50 mM +0.1 -0.1 -2.8 -0.2 +0.1
stress R2A with Phosphomycin 50 mM +0.1 +0.0 -2.6 -0.1 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.4 -1.4 +0.1 -0.4
carbon source Uridine 5-monophosphate (C) -0.3 -0.1 -1.4 -0.1 -0.0
carbon source D-Ribose (C) -0.1 -0.2 -1.3 +0.1 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.1 -1.3 +0.2 -0.1
carbon source D-Saccharic potassium salt (C) +0.5 -0.2 -1.8 +0.0 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.3 -1.0 +0.2 +0.1
carbon source D-Saccharic potassium salt (C) +0.4 +0.3 -2.0 +0.0 -0.0
carbon source NAG (C) +0.1 +0.0 -1.4 -0.1 +0.1
carbon source Uridine 5-monophosphate (C) +0.3 -0.1 -1.8 +0.1 +0.2
carbon source D-Galacturonic Acid (C) -0.1 +0.1 -1.2 +0.1 -0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 -0.9 -0.3 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.2 +0.3 -0.9 -0.1 -0.3
carbon source methyl-alpha-D-xylopyranoside (C) +0.2 -0.2 -1.2 +0.1 +0.2
carbon source Ferulic Acid (C) +0.2 +0.1 -1.3 -0.1 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.6 +0.0 -0.4 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.6 -0.6 -0.3 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.4 -0.5 +0.1 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.3 -0.3 -0.3 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 -0.5 +0.4 +0.2
carbon source D-Sorbitol (C) +0.4 +0.1 -0.6 -0.2 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.0 -0.1 -0.5 +0.3 +0.0
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.8 +0.2 +0.2 +0.1 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 +0.7 -0.2 +0.1 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +1.4 -1.0 +0.1 +0.5
nitrogen source DL-2-Aminobutyric (N) +0.3 +0.3 +0.5 +0.2 +0.3
stress R2A with Vancomycin 0.009 mM +0.5 +0.3 +1.0 -0.0 +0.1
stress R2A with Vancomycin 0.009 mM +0.6 +0.2 +1.2 +0.2 -0.1
stress R2A with tungstate 375 mM +0.2 +0.1 +5.2 +0.2 -0.2
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