Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4536 and Atu4537 are separated by 10 nucleotidesAtu4537 and Atu4538 are separated by 368 nucleotidesAtu4538 and Atu4539 are separated by 12 nucleotidesAtu4539 and Atu4540 are separated by 2 nucleotides Atu4536: Atu4536 - amino acid ABC transporter permease, at 1,683,061 to 1,683,711 Atu4536 Atu4537: Atu4537 - amino acid ABC transporter permease, at 1,683,722 to 1,684,390 Atu4537 Atu4538: Atu4538 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,684,759 to 1,685,820 Atu4538 Atu4539: Atu4539 - protocatechuate 3,4-dioxygenase alpha chain, at 1,685,833 to 1,686,453 Atu4539 Atu4540: Atu4540 - protocatechuate 3,4-dioxygenase subunit beta, at 1,686,456 to 1,687,196 Atu4540
Group Condition Atu4536 Atu4537 Atu4538 Atu4539 Atu4540
carbon source D-Quinic (C) -4.5 -5.1 -7.2 -5.3 -5.3
carbon source D-Quinic (C) -4.4 -4.8 -6.8 -4.1 -5.6
carbon source Protocatechuic Acid (C) +0.0 -0.3 -7.6 -4.1 -3.3
carbon source Protocatechuic Acid (C) -0.1 -0.2 -8.3 -3.7 -3.0
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.1 -4.3 -1.8 -1.7
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +0.0 -4.5 -1.8 -1.7
carbon source 4-Hydroxybenzoic Acid (C) -0.0 +0.1 -4.3 -2.0 -1.2
carbon source p-Coumaric (C) -0.0 +0.1 -3.6 -1.9 -1.9
carbon source p-Coumaric (C) +0.2 -0.3 -3.6 -1.6 -1.7
carbon source 4-Hydroxybenzoic Acid (C) -0.2 +0.0 -3.3 -1.4 -1.0
carbon source Ferulic Acid (C) +0.1 -0.3 -3.0 -1.2 -0.9
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 -0.8 -0.1 -0.7 -2.3
carbon source Phloretic Acid (C) +0.0 +0.2 -2.2 -1.2 -1.1
carbon source Ferulic Acid (C) +0.2 -0.1 -2.4 -1.0 -0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.0 -0.3 +0.1 -3.2
carbon source Phloretic Acid (C) +0.0 -0.1 -1.9 -1.0 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.7 -0.3 -0.6 -1.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.7 -0.5 -0.2 -2.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.2 -0.0 -0.4 -1.6
phage AgroPhage_B07 +0.0 -0.3 +0.0 +0.0 -2.0
phage AgroPhage_F04 +0.0 -0.2 +0.0 -0.0 -2.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.8 -1.2 +0.1 +0.3
phage AgroPhage_H04 +0.3 +0.3 +0.0 -0.1 -2.2
phage AgroPhage_D04 -0.3 +0.1 +0.1 +0.2 -1.7
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.6 -1.1 +0.0 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.9 +0.5 -0.0 -1.0
nophagecontrol No phage control -0.3 +0.4 -0.0 +0.2 -1.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +0.6 -1.3 +0.3 -0.3
phage AgroPhage_F10 -0.0 +0.7 +0.4 -0.4 -1.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +1.2 -0.8 +0.1 +0.4
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