Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4528 and Atu4529 are separated by 63 nucleotidesAtu4529 and Atu4530 are separated by 121 nucleotidesAtu4530 and Atu4531 overlap by 26 nucleotidesAtu4531 and Atu4532 overlap by 4 nucleotides Atu4528: Atu4528 - hypothetical protein, at 1,676,076 to 1,676,378 Atu4528 Atu4529: Atu4529 - hypothetical protein, at 1,676,442 to 1,678,343 Atu4529 Atu4530: Atu4530 - TetR family transcriptional regulator, at 1,678,465 to 1,679,157 Atu4530 Atu4531: Atu4531 - 3-dehydroquinate dehydratase, at 1,679,132 to 1,679,575 Atu4531 Atu4532: Atu4532 - shikimate 5-dehydrogenase, at 1,679,572 to 1,680,441 Atu4532
Group Condition Atu4528 Atu4529 Atu4530 Atu4531 Atu4532
carbon source D-Quinic (C) +0.0 -6.8 -2.4 -6.8 -6.4
carbon source D-Quinic (C) +0.0 -7.1 -1.6 -6.7 -5.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.1 -1.2 +0.4 -1.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.1 -0.7 -0.1 -1.2
carbon source NAG (C) -0.0 -0.1 -1.7 -0.3 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -1.2 +0.2 -0.8
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 -0.3 -0.5 +0.1 -1.1
nitrogen source Orotic (N) -0.1 -0.0 -2.2 +0.2 -0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -1.2 -0.0 -0.8
nitrogen source Orotic (N) +0.1 -0.0 -2.3 +0.3 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 -0.1 -0.5 -0.2 -1.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.1 -0.5 +0.0 -1.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 -1.5 +0.2 -0.7
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.4 -0.3 +0.4 +0.3 -0.9
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 -1.0 +0.2 -0.6
no phage P2L5 +0.7 -0.1 -0.6 +0.6 -0.7
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 -0.3 +0.5 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.0 +0.6 +0.6 -0.4
carbon source L-Xylose (C) -0.1 +0.1 +1.8 -0.2 -0.3
carbon source a-Ketoglutaric (C) +0.2 -0.1 +1.9 -0.1 +0.1
carbon source D-Saccharic potassium salt (C) +0.2 -0.1 +2.4 +0.2 -0.2
carbon source succinate (C) -0.2 -0.0 +2.3 -0.1 +0.6
carbon source D-Saccharic potassium salt (C) +0.0 -0.2 +2.5 +0.2 +0.0
carbon source succinate (C) +0.1 -0.1 +2.1 +0.0 +0.5
carbon source Fumarate (C) +0.1 -0.1 +2.3 +0.1 +0.5
carbon source Fumarate (C) -0.0 -0.1 +2.4 +0.1 +0.5
carbon source DL-glyceraldehyde (C) -0.0 -0.0 +2.7 +0.1 +0.6
carbon source DL-glyceraldehyde (C) +0.0 +0.1 +2.6 +0.1 +0.8
carbon source D-Galacturonic Acid (C) +0.1 +0.0 +2.8 +0.1 +1.4
carbon source D-Galacturonic Acid (C) +0.2 -0.0 +3.4 -0.0 +1.3
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