Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4480 and Atu4481 are separated by 92 nucleotidesAtu4481 and Atu4482 are separated by 47 nucleotidesAtu4482 and Atu4483 are separated by 243 nucleotidesAtu4483 and Atu4484 overlap by 10 nucleotides Atu4480: Atu4480 - hypothetical protein, at 1,625,108 to 1,625,755 Atu4480 Atu4481: Atu4481 - LacI family transcriptional regulator, at 1,625,848 to 1,626,870 Atu4481 Atu4482: Atu4482 - xylulokinase, at 1,626,918 to 1,628,372 Atu4482 Atu4483: Atu4483 - xylose isomerase, at 1,628,616 to 1,629,926 Atu4483 Atu4484: Atu4484 - hypothetical protein, at 1,629,917 to 1,630,402 Atu4484
Group Condition Atu4480 Atu4481 Atu4482 Atu4483 Atu4484
carbon source methyl-beta-D-xylopyranoside (C) -0.1 -4.5 -7.9 -7.7 +0.1
carbon source Xylobiose (C) -0.1 -6.1 -6.3 -6.6 -0.1
carbon source methyl-beta-D-xylopyranoside (C) +0.1 -4.7 -7.4 -6.5 +0.2
carbon source Xylobiose (C) +0.1 -4.4 -6.4 -7.4 -0.0
carbon source Xylobiose (C) -0.0 -4.7 -6.9 -6.5 +0.1
carbon source methyl-beta-D-xylopyranoside (C) -0.2 -5.9 -5.8 -5.5 +0.0
carbon source methyl-beta-D-xylopyranoside (C) -0.3 -5.0 -6.2 -5.8 +0.0
carbon source Xylobiose (C) -0.3 -3.9 -5.9 -4.9 -0.1
carbon source D-(-)-lyxose (C) -0.1 -2.1 -7.3 -1.8 +0.1
carbon source D-(-)-lyxose (C) +0.2 -1.6 -6.5 -1.5 -0.1
carbon source D-Xylose (C) -0.3 -2.6 -3.2 -3.4 +0.1
carbon source D-Xylose (C) +0.1 -2.7 -3.4 -3.1 -0.2
carbon source methyl-alpha-D-xylopyranoside (C) +0.1 -1.6 -3.8 -3.7 -0.1
carbon source methyl-alpha-D-xylopyranoside (C) -0.1 -1.8 -3.1 -3.6 +0.2
carbon source Xylitol (C) +0.1 +0.3 -5.7 +0.2 -0.1
carbon source Xylitol (C) +0.1 +0.6 -6.1 +0.1 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.8 -0.9 -0.2 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.1 -0.1 -0.3 -1.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.3 -0.3 +0.2 -0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.0 +0.1 -0.2 -1.2
carbon source D-Arabinose (C) +0.0 +0.0 -1.5 -0.1 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.4 -0.3 -0.1 -0.7
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.6 -0.2 +0.1 -0.5
carbon source D-Arabinose (C) -0.1 +0.0 -1.5 -0.2 +0.3
carbon source L-Sorbose (C) -0.3 -0.6 +0.2 -0.1 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.5 -0.3 +0.3 +0.1 -0.8
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.4 -0.4 -0.2 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 -0.3 -0.2 -0.5
stress R2A with Vancomycin 0.009 mM +0.4 +0.6 +0.3 -0.1 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.2 +0.1 +0.2 +0.9
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