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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu4475 and Atu4476 are separated by 238 nucleotides
Atu4476 and Atu4477 are separated by 182 nucleotides
Atu4477 and Atu4478 are separated by 78 nucleotides
Atu4478 and Atu4479 are separated by 21 nucleotides
Atu4475: Atu4475 - transporter, at 1,618,245 to 1,620,017
Atu4475
Atu4476: Atu4476 - hypothetical protein, at 1,620,256 to 1,621,017
Atu4476
Atu4477: Atu4477 - TetR family transcriptional regulator, at 1,621,200 to 1,621,886
Atu4477
Atu4478: Atu4478 - multidrug resistance efflux pump, at 1,621,965 to 1,623,263
Atu4478
Atu4479: Atu4479 - MFS permease, at 1,623,285 to 1,624,868
Atu4479
Group
Condition
Atu4475
Atu4476
Atu4477
Atu4478
Atu4479
carbon source
L-ascorbate (C)
-0.3
-0.4
-3.2
+0.1
+0.1
carbon source
m-Inositol (C)
-0.0
+0.0
-2.3
-0.1
+0.1
phage
AgroPhage_D10
-0.4
-0.0
-1.3
-0.3
-0.3
carbon source
L-ascorbate (C)
-0.2
+0.0
-2.3
+0.0
+0.2
carbon source
m-Inositol (C)
-0.2
-0.1
-2.0
-0.1
+0.1
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.3
-0.1
-0.7
-0.3
-0.5
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.1
-0.4
-0.6
-0.3
-0.4
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.1
-0.1
-1.3
-0.1
-0.2
carbon source
L-Galactose (C)
-0.2
+0.1
-1.3
-0.2
-0.2
phage
AgroPhage_F10
+0.1
-0.1
-1.4
-0.2
-0.1
stress
Pyrogallol 0.5 mM
-0.1
+0.1
-0.1
-0.8
-0.6
carbon source
L-Sorbose (C)
-0.1
-0.0
-1.4
-0.1
+0.2
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
-0.2
-0.8
-0.2
-0.4
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.2
-0.1
-1.2
-0.1
-0.2
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.4
+0.0
-1.1
-0.3
-0.4
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.2
-0.0
-1.3
+0.1
-0.3
stress
R2A with Tetracycline 0.002 mM
-0.1
+0.1
-1.3
-0.1
+0.1
nitrogen source
L-Pipecolic Acid (N)
+0.1
+0.1
-1.4
-0.1
+0.0
stress
R2A with Tetracycline 0.002 mM
-0.3
+0.1
-1.2
-0.0
+0.1
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.1
+0.2
-1.1
-0.3
-0.0
stress
R2A with Vancomycin 0.009 mM
-0.0
+0.2
-2.1
+0.4
+0.5
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.2
-0.1
-1.1
+0.1
-0.2
phage
AgroPhage_D04
+0.2
-0.5
-0.7
+0.2
-0.1
stress
Pyrogallol 0.5 mM
+0.1
+0.1
+0.2
-0.6
-0.7
nitrogen source
L-Pipecolic Acid (N)
+0.0
+0.1
-1.2
+0.1
+0.1
stress
Dodecyl Sulfate 0.2 mM
-0.1
-0.1
-2.1
+0.8
+0.9
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.1
+0.4
-0.8
+0.1
+0.3
stress
Dodecyl Sulfate 0.2 mM
-0.0
+0.2
-1.2
+0.6
+0.5
stress
R2A with Vancomycin 0.009 mM
+0.1
+0.2
-1.3
+0.5
+0.9
stress
R2A with tungstate 375 mM
+1.8
+0.2
+0.5
+0.1
+0.0
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