Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4475 and Atu4476 are separated by 238 nucleotidesAtu4476 and Atu4477 are separated by 182 nucleotidesAtu4477 and Atu4478 are separated by 78 nucleotidesAtu4478 and Atu4479 are separated by 21 nucleotides Atu4475: Atu4475 - transporter, at 1,618,245 to 1,620,017 Atu4475 Atu4476: Atu4476 - hypothetical protein, at 1,620,256 to 1,621,017 Atu4476 Atu4477: Atu4477 - TetR family transcriptional regulator, at 1,621,200 to 1,621,886 Atu4477 Atu4478: Atu4478 - multidrug resistance efflux pump, at 1,621,965 to 1,623,263 Atu4478 Atu4479: Atu4479 - MFS permease, at 1,623,285 to 1,624,868 Atu4479
Group Condition Atu4475 Atu4476 Atu4477 Atu4478 Atu4479
carbon source L-ascorbate (C) -0.3 -0.4 -3.2 +0.1 +0.1
carbon source m-Inositol (C) -0.0 +0.0 -2.3 -0.1 +0.1
phage AgroPhage_D10 -0.4 -0.0 -1.3 -0.3 -0.3
carbon source L-ascorbate (C) -0.2 +0.0 -2.3 +0.0 +0.2
carbon source m-Inositol (C) -0.2 -0.1 -2.0 -0.1 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 -0.7 -0.3 -0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 -0.6 -0.3 -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -1.3 -0.1 -0.2
carbon source L-Galactose (C) -0.2 +0.1 -1.3 -0.2 -0.2
phage AgroPhage_F10 +0.1 -0.1 -1.4 -0.2 -0.1
stress Pyrogallol 0.5 mM -0.1 +0.1 -0.1 -0.8 -0.6
carbon source L-Sorbose (C) -0.1 -0.0 -1.4 -0.1 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 -0.8 -0.2 -0.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -1.2 -0.1 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.0 -1.1 -0.3 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.0 -1.3 +0.1 -0.3
stress R2A with Tetracycline 0.002 mM -0.1 +0.1 -1.3 -0.1 +0.1
nitrogen source L-Pipecolic Acid (N) +0.1 +0.1 -1.4 -0.1 +0.0
stress R2A with Tetracycline 0.002 mM -0.3 +0.1 -1.2 -0.0 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.2 -1.1 -0.3 -0.0
stress R2A with Vancomycin 0.009 mM -0.0 +0.2 -2.1 +0.4 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -1.1 +0.1 -0.2
phage AgroPhage_D04 +0.2 -0.5 -0.7 +0.2 -0.1
stress Pyrogallol 0.5 mM +0.1 +0.1 +0.2 -0.6 -0.7
nitrogen source L-Pipecolic Acid (N) +0.0 +0.1 -1.2 +0.1 +0.1
stress Dodecyl Sulfate 0.2 mM -0.1 -0.1 -2.1 +0.8 +0.9
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.4 -0.8 +0.1 +0.3
stress Dodecyl Sulfate 0.2 mM -0.0 +0.2 -1.2 +0.6 +0.5
stress R2A with Vancomycin 0.009 mM +0.1 +0.2 -1.3 +0.5 +0.9
stress R2A with tungstate 375 mM +1.8 +0.2 +0.5 +0.1 +0.0
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