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Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu4468 and Atu4469 overlap by 4 nucleotides
Atu4469 and Atu4470 overlap by 20 nucleotides
Atu4470 and Atu4471 are separated by 2 nucleotides
Atu4471 and Atu4472 are separated by 284 nucleotides
Atu4468: Atu4468 - iron transport ABC transporter permease, at 1,609,891 to 1,610,745
Atu4468
Atu4469: Atu4469 - iron ABC transporter permease, at 1,610,742 to 1,611,602
Atu4469
Atu4470: Atu4470 - iron ABC transporter ATPase, at 1,611,583 to 1,612,485
Atu4470
Atu4471: Atu4471 - ABC transporter substrate-binding protein, at 1,612,488 to 1,613,387
Atu4471
Atu4472: Atu4472 - hypothetical protein, at 1,613,672 to 1,614,580
Atu4472
Group
Condition
Atu4468
Atu4469
Atu4470
Atu4471
Atu4472
stress
R2A with EDTA 0.25 mM
-2.2
-2.9
-1.9
-2.4
+0.2
stress
R2A with Calcium Chloride Dihydrate 87.5 mM
-1.9
-2.2
-2.3
-1.9
-0.2
stress
R2A with EDTA 0.25 mM
-2.4
-1.3
-2.3
-2.2
+0.2
stress
R2A with Calcium Chloride Dihydrate 87.5 mM
-1.7
-1.6
-1.7
-1.9
-0.1
stress
R2A with Strontium chloride 750 mM
-1.6
-1.0
-1.6
-1.6
-0.0
stress
R2A with Lithium chloride 900 mM
-1.8
-1.3
-1.5
-1.4
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
-1.5
-1.8
-1.3
-1.2
+0.3
stress
R2A with Chloride 700 mM
-1.4
-1.9
-1.1
-1.0
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
-1.2
-1.7
-0.8
-1.4
-0.2
stress
R2A with Ceftazidime 4 mM
-1.3
-1.1
-1.5
-1.5
+0.3
stress
R2A with Strontium chloride 750 mM
-1.6
-1.6
-1.0
-1.2
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
-1.8
-1.0
-1.0
-1.2
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-2.0
-1.0
-1.1
-0.2
stress
R2A with molybdate 400 mM
-1.3
-1.1
-1.1
-1.2
-0.1
stress
R2A with molybdate 400 mM
-1.1
-1.4
-1.1
-1.4
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.4
-1.4
-0.9
-1.2
+0.2
carbon source
2-Keto-D-gluconic hemicalcium salt (C)
-0.9
-1.2
-1.1
-1.1
-0.3
stress
R2A with Lithium chloride 900 mM
-1.1
-0.7
-1.7
-1.2
+0.4
stress
R2A with Ceftazidime 4 mM
-1.0
-1.4
-1.1
-1.2
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.7
-1.5
-1.3
-0.7
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.5
-0.6
-1.5
-0.8
+0.2
stress
R2A with Vancomycin 0.009 mM
-1.0
-0.5
-1.0
-1.4
-0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.1
-1.0
-1.2
-1.0
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.4
-0.9
-1.5
-1.2
+1.2
stress
R2A with Chlorate 400 mM
-0.9
-0.7
-0.9
-1.1
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.6
-1.4
-1.0
-1.2
+3.1
stress
Chloramphenicol 12.5 ug/mL
+1.2
+1.1
+1.2
+1.0
+0.0
stress
Chloramphenicol 12.5 ug/mL
+1.3
+1.6
+1.4
+1.1
-0.5
stress
R2A with m-arsenite 0.8 mM
+1.2
+1.2
+1.6
+1.8
-0.1
stress
R2A with m-arsenite 0.8 mM
+1.2
+1.5
+2.0
+1.8
-0.4
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