Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4462 and Atu4464 are separated by 195 nucleotidesAtu4464 and Atu4465 are separated by 106 nucleotidesAtu4465 and Atu4466 are separated by 197 nucleotidesAtu4466 and Atu4467 are separated by 55 nucleotides Atu4462: Atu4462 - transcriptional regulator, at 1,605,460 to 1,606,491 Atu4462 Atu4464: Atu4464 - transaldolase B, at 1,606,687 to 1,607,652 Atu4464 Atu4465: Atu4465 - transcriptional regulator, at 1,607,759 to 1,608,526 Atu4465 Atu4466: Atu4466 - oxidoreductase, at 1,608,724 to 1,609,455 Atu4466 Atu4467: Atu4467 - hypothetical protein, at 1,609,511 to 1,609,684 Atu4467
Group Condition Atu4462 Atu4464 Atu4465 Atu4466 Atu4467
carbon source L-Fucose (C) -0.2 N.D. +1.1 -3.9 N.D.
carbon source L-Fucose (C) -0.2 N.D. +1.0 -3.1 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 N.D. -0.8 -0.6 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. -0.6 -0.6 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 N.D. -0.4 -0.3 N.D.
phage AgroPhage_E04 -0.3 N.D. -0.8 -0.4 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 N.D. +0.3 -0.9 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 N.D. -0.4 -0.5 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 N.D. -0.5 -0.1 N.D.
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 N.D. -0.6 -0.6 N.D.
carbon source L-Galactose (C) -0.2 N.D. -0.3 -0.8 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 N.D. -0.7 -0.3 N.D.
no phage P3L5 -0.3 N.D. -0.7 -0.3 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. +0.1 -0.6 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. +0.3 -0.6 N.D.
stress R2A with Chlorate 400 mM -0.6 N.D. -0.4 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 N.D. -0.2 +0.4 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. +0.7 -0.6 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 N.D. +0.6 -0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 N.D. +0.2 +0.6 N.D.
phage AgroPhage_D10 +0.2 N.D. -0.7 +0.5 N.D.
nitrogen source DL-2-Aminobutyric (N) -0.6 N.D. +0.4 +0.4 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 N.D. +0.7 -0.6 N.D.
stress R2A with Vancomycin 0.009 mM -0.6 N.D. +0.4 +0.8 N.D.
carbon source L-Rhamnose (C) -0.4 N.D. +1.5 -0.3 N.D.
carbon source L-Rhamnose (C) -0.3 N.D. +1.6 -0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.1 N.D. +0.4 +0.0 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 N.D. +1.0 +0.5 N.D.
carbon source D-(-)-lyxose (C) -0.0 N.D. +1.5 -0.0 N.D.
carbon source D-(-)-lyxose (C) -0.1 N.D. +1.4 +0.3 N.D.
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