Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4456 and Atu4457 overlap by 39 nucleotidesAtu4457 and Atu4458 are separated by 37 nucleotidesAtu4458 and Atu4459 are separated by 266 nucleotidesAtu4459 and Atu4460 are separated by 52 nucleotides Atu4456: Atu4456 - CysZ-like protein, at 1,601,741 to 1,602,478 Atu4456 Atu4457: Atu4457 - endonuclease III, at 1,602,440 to 1,603,222 Atu4457 Atu4458: Atu4458 - hypothetical protein, at 1,603,260 to 1,603,742 Atu4458 Atu4459: Atu4459 - 6-O-methylguanine DNA methyltransferase, at 1,604,009 to 1,604,881 Atu4459 Atu4460: Atu4460 - hypothetical protein, at 1,604,934 to 1,605,170 Atu4460
Group Condition Atu4456 Atu4457 Atu4458 Atu4459 Atu4460
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.1 -0.4 -0.0 N.D.
phage AgroPhage_C04 +0.5 -0.1 -1.1 -0.4 N.D.
phage AgroPhage_D04 -0.3 +0.2 -0.1 -0.8 N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.4 -0.0 -1.1 -0.0 N.D.
stress R2A with Vancomycin 0.009 mM +0.4 -0.5 -0.9 +0.3 N.D.
phage AgroPhage_C10 +0.5 -0.3 -0.8 -0.0 N.D.
nophagecontrol No phage control -0.4 -0.1 +0.5 -0.4 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.5 +0.4 +0.3 N.D.
nitrogen source DL-2-Aminobutyric (N) +0.3 -0.6 -0.9 +0.7 N.D.
stress R2A with sodium iodate 30 mM +0.3 -0.2 -0.7 +0.2 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.6 +0.4 +0.2 N.D.
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.5 +0.0 -0.6 N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 -1.1 +0.5 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.1 -0.2 -0.7 -0.3 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.3 -0.9 +0.6 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.3 -0.6 +0.6 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.6 +0.4 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +0.5 +0.2 -0.7 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 -0.2 -0.3 -0.2 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.2 +1.0 -0.2 N.D.
phage AgroPhage_B01 -0.4 -0.2 +0.7 +0.3 N.D.
phage AgroPhage_H10 -0.3 -0.3 +0.5 +0.4 N.D.
phage AgroPhage_E10 +0.3 -0.4 +0.5 +0.2 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.1 -0.5 +0.6 N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 -0.4 +0.6 +0.4 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.3 +0.8 +0.5 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 +1.2 +0.2 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.6 +1.0 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -0.1 +1.3 +0.3 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.1 +0.8 +0.3 N.D.
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