Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4450 and Atu4451 are separated by 125 nucleotidesAtu4451 and Atu4452 are separated by 6 nucleotidesAtu4452 and Atu4453 are separated by 54 nucleotidesAtu4453 and Atu4454 are separated by 104 nucleotides Atu4450: Atu4450 - sugar ABC transporter ATPase, at 1,595,541 to 1,596,539 Atu4450 Atu4451: Atu4451 - mannitol 2-dehydrogenase, at 1,596,665 to 1,598,149 Atu4451 Atu4452: Atu4452 - hypothetical protein, at 1,598,156 to 1,598,875 Atu4452 Atu4453: Atu4453 - ribitol kinase, at 1,598,930 to 1,600,507 Atu4453 Atu4454: Atu4454 - RpiR family transcriptional regulator, at 1,600,612 to 1,601,409 Atu4454
Group Condition Atu4450 Atu4451 Atu4452 Atu4453 Atu4454
carbon source D-Mannitol (C) -4.8 -8.2 +0.4 -1.7 -0.0
carbon source D-Mannitol (C) -4.3 -7.7 +0.2 -2.1 +0.1
carbon source D-(-)-lyxose (C) -0.7 -3.0 -0.6 -0.3 -0.3
carbon source D-(-)-lyxose (C) -0.9 -3.0 -0.7 -0.2 -0.1
carbon source D-Arabinose (C) -0.9 -2.4 -0.1 -0.3 +0.0
carbon source D-Arabinose (C) -0.8 -2.1 -0.1 -0.5 -0.1
stress R2A with Vancomycin 0.009 mM +0.0 -2.9 -0.2 -0.2 -0.3
stress R2A with Rifampicin 0.0007 mM -0.2 -2.6 +0.0 -0.0 +0.2
carbon source D-Galacturonic Acid (C) +0.0 -2.2 -0.2 -0.0 -0.0
carbon source D-Saccharic potassium salt (C) +0.2 -1.5 -0.7 -0.4 +0.1
carbon source D-Galacturonic Acid (C) +0.0 -2.1 -0.2 +0.1 +0.0
phage AgroPhage_E10 -0.6 -0.6 -1.0 -0.2 +0.3
stress R2A with Vancomycin 0.009 mM +0.2 -3.1 +0.5 +0.0 +0.3
stress R2A with m-arsenite 0.8 mM +0.0 -1.6 +0.5 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -1.7 +0.5 -0.0 -0.3
stress R2A with Fusidic 0.002 mM -0.1 -1.6 +0.2 +0.0 +0.3
stress R2A with Rifampicin 0.0007 mM -0.1 -1.7 +0.3 +0.1 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -1.5 +0.2 +0.0 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -1.5 +0.2 +0.3 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -1.2 +0.7 -0.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 -1.4 +0.1 +0.2 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.8 +0.7 +0.3 -0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -1.3 +1.2 -0.0 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.8 +1.2 +0.6 -0.6
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -1.0 +0.4 +0.3 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.8 +0.7 +0.5 +0.1
carbon source Xylitol (C) -0.5 +3.1 +1.0 -0.5 +0.1
carbon source Xylitol (C) -0.4 +2.9 +0.9 -0.4 +0.3
carbon source D-Sorbitol (C) +2.3 -1.7 +1.1 +2.8 +0.5
carbon source D-Sorbitol (C) +2.4 -1.4 +1.3 +3.1 +0.4
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