Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4444 and Atu4445 are separated by 48 nucleotidesAtu4445 and Atu4446 are separated by 293 nucleotidesAtu4446 and Atu4447 are separated by 143 nucleotidesAtu4447 and Atu4448 are separated by 28 nucleotides Atu4444: Atu4444 - hippurate hydrolase, at 1,587,919 to 1,589,043 Atu4444 Atu4445: Atu4445 - ABC transporter permease, at 1,589,092 to 1,590,942 Atu4445 Atu4446: Atu4446 - hypothetical protein, at 1,591,236 to 1,592,189 Atu4446 Atu4447: Atu4447 - sorbitol ABC transporter substrate-binding protein, at 1,592,333 to 1,593,646 Atu4447 Atu4448: Atu4448 - sorbitol/mannitol ABC transporter permease, at 1,593,675 to 1,594,691 Atu4448
Group Condition Atu4444 Atu4445 Atu4446 Atu4447 Atu4448
carbon source D-Mannitol (C) +0.1 +0.2 +0.4 -4.9 -4.3
carbon source D-Mannitol (C) -0.1 +0.1 +0.4 -4.8 -4.1
carbon source D-Galacturonic Acid (C) -0.1 -0.1 -3.8 +0.1 -0.1
carbon source D-Glucosamine Hydrochloride (C) -0.2 +0.2 -4.2 +0.1 +0.1
carbon source D-Glucosamine Hydrochloride (C) -0.0 +0.0 -3.7 +0.2 -0.1
carbon source D-Saccharic potassium salt (C) -0.5 -0.0 -2.6 -0.1 -0.0
carbon source D-Galacturonic Acid (C) -0.1 +0.2 -3.3 -0.0 +0.1
carbon source D-Saccharic potassium salt (C) -0.1 +0.2 -3.2 -0.0 -0.1
carbon source D-(-)-lyxose (C) -0.1 +0.1 -0.7 -0.8 -1.1
carbon source D-(-)-lyxose (C) -0.0 +0.1 -0.7 -0.7 -1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.3 -1.3 -0.1 -0.2
stress R2A with m-arsenite 0.8 mM -0.2 -0.4 -1.7 -0.0 +0.3
carbon source NAG (C) -0.0 +0.1 -1.8 -0.2 +0.0
carbon source D-Arabinose (C) -0.1 +0.1 +0.3 -0.7 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.1 -1.4 +0.2 -0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.2 -1.2 -0.1 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.5 -1.0 +0.1 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.6 -1.0 +0.1 +0.8
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 -1.2 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.6 -1.3 -0.2 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.1 -0.8 +0.3 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 +0.2 -1.4 +0.2 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.1 -1.1 +0.1 +0.7
carbon source Maltitol (C) -0.2 -0.3 -0.2 +0.9 +0.8
phage AgroPhage_C10 +0.8 +0.3 +0.6 -0.3 -0.2
carbon source Maltitol (C) -0.2 -0.1 -0.4 +1.0 +0.9
carbon source Xylitol (C) -0.1 +0.0 +4.7 -0.4 -0.7
carbon source Xylitol (C) +0.0 -0.2 +5.0 -0.5 -0.6
carbon source D-Sorbitol (C) -0.1 -0.0 -0.5 +2.9 +2.3
carbon source D-Sorbitol (C) -0.1 -0.0 -0.2 +2.8 +2.4
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