Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4439 and Atu4440 overlap by 1 nucleotidesAtu4440 and Atu4441 are separated by 53 nucleotidesAtu4441 and Atu4442 are separated by 114 nucleotidesAtu4442 and Atu4443 are separated by 71 nucleotides Atu4439: Atu4439 - oligopeptide ABC transporter permease, at 1,583,401 to 1,584,351 Atu4439 Atu4440: Atu4440 - oligopeptide ABC transporter permease, at 1,584,351 to 1,585,169 Atu4440 Atu4441: Atu4441 - amidase, at 1,585,223 to 1,586,620 Atu4441 Atu4442: Atu4442 - hypothetical protein, at 1,586,735 to 1,587,283 Atu4442 Atu4443: Atu4443 - hypothetical protein, at 1,587,355 to 1,587,705 Atu4443
Group Condition Atu4439 Atu4440 Atu4441 Atu4442 Atu4443
phage AgroPhage_A07 N.D. N.D. -0.7 -0.3 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.4 -0.2 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.3 -0.4 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.2 -0.2 -0.7
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.4 -0.7 -0.8
phage AgroPhage_B01 N.D. N.D. +0.0 -0.5 -0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.1 -0.7 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.1 -0.2 -0.7
stress R2A with Vancomycin 0.009 mM N.D. N.D. -0.4 -0.6 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. N.D. -0.2 +0.2 -0.6
phage AgroPhage_C04 N.D. N.D. +0.3 -0.3 -0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. N.D. -0.2 +0.4 -0.6
phage AgroPhage_D10 N.D. N.D. +0.3 -0.1 -0.7
carbon source D-Sorbitol (C) N.D. N.D. +0.0 +0.4 -0.6
stress R2A with Sisomicin 0.001 mM N.D. N.D. +0.1 -0.5 +0.4
phage AgroPhage_D04 N.D. N.D. -0.2 +0.5 -0.2
phage AgroPhage_F04 N.D. N.D. -0.1 +0.7 -0.4
stress R2A with Magnesium sulfate 400 mM N.D. N.D. +0.2 -0.4 +0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.8 +0.1 -0.6
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. -0.3 +0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.2 +0.6 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. -0.1 +0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.1 +0.9 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days N.D. N.D. +0.1 +0.5 +0.3
no phage P1L4 N.D. N.D. +0.3 +0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.1 +0.7 +0.1
stress R2A with Chloride 700 mM N.D. N.D. -0.1 +0.6 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days N.D. N.D. +0.0 +0.5 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. N.D. +0.5 +0.4 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. N.D. +0.3 +0.5 +0.5
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