Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4437 and Atu4438 are separated by 209 nucleotidesAtu4438 and Atu4439 are separated by 194 nucleotidesAtu4439 and Atu4440 overlap by 1 nucleotidesAtu4440 and Atu4441 are separated by 53 nucleotides Atu4437: Atu4437 - LysR family transcriptional regulator, at 1,580,559 to 1,581,461 Atu4437 Atu4438: Atu4438 - oligopeptide ABC transporter substrate-binding protein, at 1,581,671 to 1,583,206 Atu4438 Atu4439: Atu4439 - oligopeptide ABC transporter permease, at 1,583,401 to 1,584,351 Atu4439 Atu4440: Atu4440 - oligopeptide ABC transporter permease, at 1,584,351 to 1,585,169 Atu4440 Atu4441: Atu4441 - amidase, at 1,585,223 to 1,586,620 Atu4441
Group Condition Atu4437 Atu4438 Atu4439 Atu4440 Atu4441
phage AgroPhage_D04 -1.4 N.D. N.D. N.D. -0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 N.D. N.D. N.D. -0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 N.D. N.D. N.D. -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 N.D. N.D. N.D. -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 N.D. N.D. N.D. -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 N.D. N.D. N.D. -0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 N.D. N.D. N.D. -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 N.D. N.D. N.D. +0.0
phage AgroPhage_A07 +0.2 N.D. N.D. N.D. -0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.6 N.D. N.D. N.D. +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.5 N.D. N.D. N.D. +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.5 N.D. N.D. N.D. +0.2
phage AgroPhage_D07 +0.3 N.D. N.D. N.D. -0.5
phage phage 99.1 -0.4 N.D. N.D. N.D. +0.3
nitrogen source DL-2-Aminobutyric (N) -0.5 N.D. N.D. N.D. +0.4
no phage P4L5 -0.4 N.D. N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 N.D. N.D. N.D. +0.6
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. N.D. N.D. -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 N.D. N.D. N.D. -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 N.D. N.D. N.D. +0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 N.D. N.D. N.D. -0.4
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 N.D. N.D. N.D. +0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 N.D. N.D. N.D. -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 N.D. N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. N.D. N.D. +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 N.D. N.D. N.D. +0.2
stress R2A with m-arsenite 0.8 mM +0.4 N.D. N.D. N.D. +0.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 N.D. N.D. N.D. +0.2
phage AgroPhage_C10 +0.6 N.D. N.D. N.D. +0.3
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