Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4435 and Atu4436 are separated by 99 nucleotidesAtu4436 and Atu4437 are separated by 350 nucleotidesAtu4437 and Atu4438 are separated by 209 nucleotidesAtu4438 and Atu4439 are separated by 194 nucleotides Atu4435: Atu4435 - oligopeptide ABC transporter ATPase, at 1,578,322 to 1,579,071 Atu4435 Atu4436: Atu4436 - IS5 family transposase, at 1,579,171 to 1,580,208 Atu4436 Atu4437: Atu4437 - LysR family transcriptional regulator, at 1,580,559 to 1,581,461 Atu4437 Atu4438: Atu4438 - oligopeptide ABC transporter substrate-binding protein, at 1,581,671 to 1,583,206 Atu4438 Atu4439: Atu4439 - oligopeptide ABC transporter permease, at 1,583,401 to 1,584,351 Atu4439
Group Condition Atu4435 Atu4436 Atu4437 Atu4438 Atu4439
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 -0.2 -0.4 N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 -0.1 -0.2 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -1.0 +0.1 -0.6 N.D. N.D.
phage AgroPhage_D04 -0.1 +0.2 -1.4 N.D. N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.4 -0.8 N.D. N.D.
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.6 -0.4 -0.3 N.D. N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.2 -0.7 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.3 -0.6 N.D. N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.4 +0.0 +0.3 N.D. N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.2 -0.3 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -1.0 -0.2 +0.1 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.8 +0.3 -0.3 N.D. N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.2 -0.4 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.3 -0.7 N.D. N.D.
phage AgroPhage_C10 -0.8 -0.5 +0.6 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.9 +0.3 -0.1 N.D. N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -1.0 +0.0 +0.3 N.D. N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.3 -0.4 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.9 +0.2 +0.3 N.D. N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 +0.2 +0.3 N.D. N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.0 +0.6 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.5 -0.5 N.D. N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +0.3 +0.2 N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.2 +0.4 +0.7 N.D. N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 +0.7 +0.1 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.1 +0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 -0.2 -0.3 N.D. N.D.
stress R2A with m-arsenite 0.8 mM +0.8 -0.0 +0.4 N.D. N.D.
phage Phage 97.3 + bacteria +0.3 +0.4 +0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 -0.0 +0.5 N.D. N.D.
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