Fitness for 5 genes in Agrobacterium fabrum C58

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Atu4415	Atu4416	Atu4418	Atu4419	Atu4420
carbon source	Glutaric (C)	+0.1	-0.0	-4.4	-3.2	-0.0
carbon source	Glutaric (C)	-0.0	-0.2	-2.8	-3.3	+0.0
nitrogen source	L-Pipecolic Acid (N)	-0.2	+0.0	-2.1	-1.8	+0.1
nitrogen source	L-Pipecolic Acid (N)	+0.1	+0.0	-1.8	-2.1	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.3	-2.0	-0.7	-0.3
nitrogen source	L-Lysine (N)	-0.0	-0.4	-1.8	-1.3	-0.1
nitrogen source	L-Lysine (N)	+0.0	-0.0	-2.3	-1.1	-0.0
nitrogen source	5-Aminovaleric (N)	-0.1	+0.3	-1.8	-1.3	-0.1
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	-0.3	-0.5	-1.3	-0.8	+0.1
lb_ntabacum_leaf	LB_Ntabacum_leaf	-0.1	-0.2	-1.5	-1.0	+0.0
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.4	-0.5	-1.1	-1.1	-0.3
stress	Erythromycin 12.5 ug/mL	+0.2	+0.0	-2.3	-0.4	-0.2
in planta	Bethi_Library_OD0.05	-0.4	+0.0	-1.3	-0.7	-0.2
stress	R2A with Spectinomycin 0.002 mM	-0.2	-0.0	-1.8	-0.5	+0.1
nitrogen source	5-Aminovaleric (N)	+0.0	+0.1	-1.3	-1.3	+0.1
stress	R2A with Gentamicin 0.00125 mM	-0.1	-0.2	-1.3	-0.9	+0.2
lb	LB	+0.3	+0.1	-1.8	-0.6	-0.1
in planta	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.5	-0.1	-2.1	-0.6	+0.1
in planta	Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct	+0.2	-0.4	-0.8	-0.4	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.3	-1.5	-0.3	-0.3
nitrogen source	DL-2-Aminobutyric (N)	-0.4	-0.8	-0.6	+0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.4	-2.0	-0.3	+0.1
stress	R2A with hypochlorite 6.25 mM	-0.2	+0.1	-1.5	-0.4	+0.3
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.3	+0.4	-1.7	-0.4	-0.3
in planta	Bethi_Library_OD0.5_6week	-0.2	+0.5	-1.2	-0.5	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.3	-2.1	+0.1	-0.0
stress	R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM	-0.1	+0.3	-1.1	-0.8	+0.3
in planta	Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.3	+0.4	-1.7	-0.4	+0.1
in planta	Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.7	-0.4	-1.3	-0.7	+0.5
in planta	Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct	+0.3	-0.3	-0.1	-1.3	+0.6