Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4405 and Atu4406 are separated by 7 nucleotidesAtu4406 and Atu4407 overlap by 8 nucleotidesAtu4407 and Atu4408 overlap by 26 nucleotidesAtu4408 and Atu4409 overlap by 31 nucleotides Atu4405: Atu4405 - periplasmic nitrate reductase NapE, at 1,541,384 to 1,541,569 Atu4405 Atu4406: Atu4406 - periplasmic nitrate reductase, ferredoxin-like protein, at 1,541,577 to 1,542,077 Atu4406 Atu4407: Atu4407 - periplasmic nitrate reductase, NapD protein, at 1,542,070 to 1,542,357 Atu4407 Atu4408: Atu4408 - nitrate reductase catalytic subunit, at 1,542,332 to 1,544,836 Atu4408 Atu4409: Atu4409 - periplasmic nitrate reductase small subunit, at 1,544,806 to 1,545,297 Atu4409
Group Condition Atu4405 Atu4406 Atu4407 Atu4408 Atu4409
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 -0.6 -0.7 -0.2 -0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.1 -1.2 -0.2 -0.1 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.8 -3.2 +0.1 +0.1
phage phage 95.1 -1.3 -0.2 -0.7 -0.0 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.2 +0.6 -3.0 -0.1 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.8 -0.9 -0.1 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.2 -2.4 +0.1 -0.3
phage AgroPhage_E04 -1.7 -0.4 -0.1 +0.2 +0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.3 -2.2 +0.2 +0.1
phage AgroPhage_D07 -0.5 +0.3 -1.4 +0.0 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.0 +0.4 -2.0 +0.0 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 -1.7 +0.3 +0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.6 +0.5 -1.0 -0.3 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.8 -1.3 -0.3 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +1.2 -3.1 +0.1 +0.5
lb_tobacco_leaf LB_Tobacco_Leaf -0.1 +0.3 -1.7 -0.0 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.7 +0.3 -2.2 +0.0 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.0 +0.5 -1.9 +0.1 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.1 +0.4 -1.6 +0.0 +0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.5 -1.2 -0.0 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.5 -1.1 +0.1 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.5 +0.2 -1.9 +0.0 +0.5
phage AgroPhage_B07 -0.2 +0.9 -1.3 -0.1 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 -0.1 -1.4 +0.2 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days +0.4 +0.5 -1.6 +0.1 +0.5
phage AgroPhage_H04 -0.1 +0.6 -1.1 +0.2 +0.7
phage AgroPhage_H10 -0.2 +0.7 -0.8 +0.2 +0.7
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 +2.3 -0.4 +0.2 -0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 +2.2 -0.2 +0.2 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.2 +0.2 +0.4 +1.3
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