Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4380 and Atu4381 are separated by 149 nucleotidesAtu4381 and Atu4382 are separated by 108 nucleotidesAtu4382 and Atu4383 are separated by 236 nucleotidesAtu4383 and Atu4384 are separated by 83 nucleotides Atu4380: Atu4380 - Crp family transcriptional regulator, at 1,517,414 to 1,518,115 Atu4380 Atu4381: Atu4381 - nitrite reductase, NirV, at 1,518,265 to 1,519,182 Atu4381 Atu4382: Atu4382 - nitrite reductase, at 1,519,291 to 1,520,433 Atu4382 Atu4383: Atu4383 - hypothetical protein, at 1,520,670 to 1,521,902 Atu4383 Atu4384: Atu4384 - hypothetical protein, at 1,521,986 to 1,522,519 Atu4384
Group Condition Atu4380 Atu4381 Atu4382 Atu4383 Atu4384
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.1 -0.4 -0.3 -0.7 -0.4
lb_sorghum_leaf LB_sorghum_leaf -0.1 -0.4 -0.2 -0.5 -0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 -0.5 -0.9 -0.5
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.0 -0.2 -0.7 -0.1
lb_sorghum_leaf LB_sorghum_leaf +0.2 -0.4 -0.2 -0.6 -0.4
lb_sorghum_leaf LB_sorghum_leaf +0.1 -0.4 -0.2 -0.2 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.4 -0.2 -0.1 -0.3 -0.2
phage AgroPhage_D10 +0.1 +0.1 -0.1 -1.1 -0.2
phage AgroPhage_C04 -0.2 -0.1 -0.0 -1.2 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.1 -0.2 +0.1 -0.6 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 -0.1 -0.2 -0.8 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 -0.3 -0.1 -0.6 -0.1
phage AgroPhage_E04 +0.2 +0.1 -0.3 -0.3 -0.3
no phage P2L5 -0.3 -0.4 +0.2 -0.4 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.5 -0.1 -0.3 +0.0
phage Phage 95.3 + bacteria -0.4 -0.1 -0.2 +0.4 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 -0.3 -0.2 -0.3 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.6 -0.1 -0.0 -0.7 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.7 +0.2 +0.7 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 +0.4 -0.3 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +0.1 -0.1 -0.5 -0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 -0.4 +0.1 +0.3 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 +0.2 +0.5 -0.3
nitrogen source DL-2-Aminobutyric (N) -0.4 +0.4 -0.1 +0.9 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 +0.1 +0.1 +0.4 -0.5
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.2 -0.3 +0.4 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.0 +0.1 +0.5 -0.2
phage AgroPhage_C10 +0.7 -0.2 +0.2 +0.8 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.5 +0.3 -0.3 +0.5
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.1 +0.6 -0.1
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