Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4379 and Atu4380 are separated by 70 nucleotidesAtu4380 and Atu4381 are separated by 149 nucleotidesAtu4381 and Atu4382 are separated by 108 nucleotidesAtu4382 and Atu4383 are separated by 236 nucleotides Atu4379: Atu4379 - cytochrome c2, at 1,516,948 to 1,517,343 Atu4379 Atu4380: Atu4380 - Crp family transcriptional regulator, at 1,517,414 to 1,518,115 Atu4380 Atu4381: Atu4381 - nitrite reductase, NirV, at 1,518,265 to 1,519,182 Atu4381 Atu4382: Atu4382 - nitrite reductase, at 1,519,291 to 1,520,433 Atu4382 Atu4383: Atu4383 - hypothetical protein, at 1,520,670 to 1,521,902 Atu4383
Group Condition Atu4379 Atu4380 Atu4381 Atu4382 Atu4383
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.4 -0.1 -0.4 -0.3 -0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.4 -0.2 -0.5 -0.9
lb_sorghum_leaf LB_sorghum_leaf -0.4 -0.1 -0.4 -0.2 -0.5
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.9 +0.2 -0.5 -0.1 -0.1
phage AgroPhage_D10 -0.3 +0.1 +0.1 -0.1 -1.1
lb_sorghum_leaf LB_sorghum_leaf -0.2 +0.2 -0.4 -0.2 -0.6
phage AgroPhage_C04 +0.4 -0.2 -0.1 -0.0 -1.2
no phage P2L5 -0.2 -0.3 -0.4 +0.2 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.0 +0.3 -0.1 -0.2 -0.8
nophagecontrol No phage control -0.5 +0.2 -0.0 +0.1 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.4 -0.5 -0.1 -0.3
phage Phage 95.3 + bacteria -0.4 -0.4 -0.1 -0.2 +0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.4 +0.1 -0.1 +0.3
nophagecontrol No phage control -1.1 +0.5 +0.1 -0.1 +0.0
phage AgroPhage_E10 -0.9 -0.0 -0.1 +0.3 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.6 -0.3 -0.2 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.2 +0.3 -0.3 -0.1 -0.6
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.3 +0.6 -0.1 -0.0 -0.7
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -0.7 +0.2 +0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.1 -0.0 +0.0 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.8 +0.1 -0.1 -0.5
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.4 +0.2 -0.3 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -0.6 +0.6 -0.0 -0.1 +0.4
nitrogen source DL-2-Aminobutyric (N) -0.3 -0.4 +0.4 -0.1 +0.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.3 +0.5 +0.3 -0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.7 -0.4 +0.1 +0.3
phage AgroPhage_C10 -0.6 +0.7 -0.2 +0.2 +0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.4 -0.2 +0.0 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 -0.1 -0.0 +0.3 +0.5
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.8 +0.1 +0.1 +0.4
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