Fitness for 5 genes in Agrobacterium fabrum C58

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1014 experiments or choose conditions or try the comparative fitness browser

500 ntAtu4372 and Atu4373 are separated by 3 nucleotidesAtu4373 and Atu4374 are separated by 33 nucleotidesAtu4374 and Atu4375 are separated by 11 nucleotidesAtu4375 and Atu4376 are separated by 152 nucleotides Atu4372: Atu4372 - ribose ABC transporter permease, at 1,509,246 to 1,510,214 Atu4372 Atu4373: Atu4373 - LacI family transcriptional regulator, at 1,510,218 to 1,511,240 Atu4373 Atu4374: Atu4374 - hypothetical protein, at 1,511,274 to 1,512,323 Atu4374 Atu4375: Atu4375 - hypothetical protein, at 1,512,335 to 1,513,504 Atu4375 Atu4376: Atu4376 - hypothetical protein, at 1,513,657 to 1,514,481 Atu4376
Group Condition Atu4372 Atu4373 Atu4374 Atu4375 Atu4376
carbon source Methyl beta-D-glucopyranoside (C) -3.7 -2.2 -1.6 -2.5 -0.2
carbon source Methyl beta-D-glucopyranoside (C) -3.1 -2.4 -2.1 -2.6 +0.0
carbon source Cellotetraose (C) -1.3 -1.8 -1.8 -2.5 -0.1
carbon source Cellotetraose (C) -1.5 -1.7 -2.0 -2.1 -0.0
carbon source Cellohexaose (C) -2.1 -1.4 -1.4 -1.9 +0.0
carbon source Gentibiose (C) -0.6 -1.8 -2.1 -1.9 +0.2
carbon source Cellohexaose (C) -1.7 -1.1 -1.3 -1.9 -0.1
carbon source methyl 3-keto-a-D-glucopyranoside (C) -1.4 -1.2 -1.5 -2.0 +0.1
carbon source Gentibiose (C) -0.6 -1.8 -1.6 -1.8 +0.1
carbon source methyl 3-keto-a-D-glucopyranoside (C) -0.9 -1.2 -1.8 -1.7 +0.1
carbon source Cellopentaose (C) -1.6 -0.9 -1.4 -1.3 -0.1
carbon source Methyl alpha-D-glucopyranoside (C) -1.2 -1.0 -1.2 -1.3 -0.3
carbon source Methyl alpha-D-glucopyranoside (C) -1.0 -0.6 -1.1 -1.1 -0.4
carbon source Cellopentaose (C) -1.6 -0.8 -0.8 -1.1 +0.1
carbon source D-Cellobiose (C) -0.3 -0.9 -1.0 -1.0 +0.1
carbon source Methyl alpha-D-glucopyranoside (C) -0.5 -0.6 -0.4 -0.7 -0.3
carbon source D-Cellobiose (C) +0.1 -1.0 -1.0 -0.7 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.4 -0.5 -0.6 -0.4 -0.5
stress R2A with m-arsenite 0.8 mM -0.1 -1.9 -0.2 -0.0 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.5 -0.8 -0.0 -0.6
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) +0.1 -0.5 -0.5 -0.8 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.0 -1.3 +0.2 -0.9
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -1.1 +0.0 -0.5 +0.5
stress R2A with m-arsenite 0.8 mM +0.2 -1.7 +0.3 +0.3 +0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.5 +0.6 -0.2 +0.1
Atjh14 +0.4 -0.1 -1.3 -0.1 +0.4
Atjh2 -0.3 +0.8 -0.6 +0.1 -0.5
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.6 +1.0 -0.1 -0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.3 +0.9 -0.2 +0.2
phage AgroPhage_C10 -0.1 +0.3 +1.5 +0.3 +0.3
remove
Atu4372
plot
remove
Atu4373
plot
remove
Atu4374
remove
Atu4375
plot
remove
Atu4376
plot