Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4366 and Atu4367 are separated by 136 nucleotidesAtu4367 and Atu4368 are separated by 70 nucleotidesAtu4368 and Atu4369 are separated by 298 nucleotidesAtu4369 and Atu4370 are separated by 103 nucleotides Atu4366: Atu4366 - short chain dehydrogenase, at 1,503,110 to 1,503,883 Atu4366 Atu4367: Atu4367 - LysR family transcriptional regulator, at 1,504,020 to 1,504,919 Atu4367 Atu4368: Atu4368 - hypothetical protein, at 1,504,990 to 1,505,385 Atu4368 Atu4369: Atu4369 - sugar ABC transporter substrate-binding protein, at 1,505,684 to 1,506,706 Atu4369 Atu4370: Atu4370 - sugar ABC transporter ATPase, at 1,506,810 to 1,508,303 Atu4370
Group Condition Atu4366 Atu4367 Atu4368 Atu4369 Atu4370
carbon source Methyl beta-D-glucopyranoside (C) -0.4 -0.1 +0.1 -3.9 -3.3
carbon source Methyl beta-D-glucopyranoside (C) -0.0 +0.1 -0.1 -2.9 -3.2
carbon source Cellohexaose (C) +0.0 +0.1 -0.1 -1.8 -1.8
carbon source Cellohexaose (C) -0.2 +0.1 +0.1 -1.6 -1.9
carbon source Cellotetraose (C) -0.2 -0.1 -0.1 -1.1 -1.5
carbon source Cellopentaose (C) +0.1 -0.1 +0.1 -1.5 -1.5
carbon source Cellopentaose (C) +0.2 -0.0 +0.1 -1.7 -1.4
carbon source methyl 3-keto-a-D-glucopyranoside (C) -0.0 +0.1 +0.0 -1.5 -1.2
carbon source methyl 3-keto-a-D-glucopyranoside (C) -0.0 -0.0 -0.0 -1.4 -1.2
carbon source Cellotetraose (C) +0.1 +0.1 +0.1 -1.4 -1.4
carbon source Methyl alpha-D-glucopyranoside (C) +0.0 -0.2 -0.1 -0.9 -1.2
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.6 -0.3 -0.5 -0.2 -0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.5 -0.1 -0.5 -0.4 -0.3
lb_sorghum_leaf LB_sorghum_leaf -0.5 -0.2 -0.4 -0.4 -0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.2 -0.4 -0.8 -0.4
carbon source Methyl alpha-D-glucopyranoside (C) +0.1 -0.1 -0.1 -0.8 -0.9
in planta Bethi_Library_OD0.01 -0.6 -0.3 -0.4 -0.3 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.5 -0.3 -0.3 -0.2 -0.5
stress Chloramphenicol 12.5 ug/mL -0.5 -0.3 +0.1 -0.8 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 +0.3 -0.1 -0.7 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.2 -0.4 +0.3 -0.6
in planta Bethi_Library_OD0.01 -0.8 -0.2 +0.2 -0.3 +0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.3 +0.2 -0.3 -0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.6 +0.0 +0.5 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 -0.5 +0.3 -0.4
stress Chloramphenicol 12.5 ug/mL -1.2 +0.2 +0.1 +0.1 +0.3
phage AgroPhage_C04 +0.3 -0.4 +0.2 +0.3 -0.6
phage AgroPhage_E10 -0.7 +0.4 +0.2 +0.5 +0.1
stress R2A with tungstate 375 mM +1.2 +0.2 -0.0 -0.8 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 +0.0 +0.6 +0.3 +0.0
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