Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4359 and Atu4360 overlap by 4 nucleotidesAtu4360 and Atu4361 are separated by 113 nucleotidesAtu4361 and Atu4362 are separated by 63 nucleotidesAtu4362 and Atu4363 are separated by 12 nucleotides Atu4359: Atu4359 - sugar ABC transporter permease, at 1,495,781 to 1,496,608 Atu4359 Atu4360: Atu4360 - sugar ABC transporter permease, at 1,496,605 to 1,497,507 Atu4360 Atu4361: Atu4361 - sugar ABC transporter substrate-binding protein, at 1,497,621 to 1,498,853 Atu4361 Atu4362: Atu4362 - hypothetical protein, at 1,498,917 to 1,499,819 Atu4362 Atu4363: Atu4363 - hypothetical protein, at 1,499,832 to 1,500,866 Atu4363
Group Condition Atu4359 Atu4360 Atu4361 Atu4362 Atu4363
phage AgroPhage_C04 -0.1 -1.1 -0.3 -1.7 -0.1
carbon source methyl-alpha-D-xylopyranoside (C) -0.1 -0.2 +0.1 -1.2 -1.9
carbon source methyl-alpha-D-xylopyranoside (C) -0.0 -0.3 +0.0 -1.4 -1.3
phage AgroPhage_B07 -0.4 -0.4 -0.6 -0.6 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 -0.1 -0.1 -1.1 -0.7
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.3 -0.5 -0.1 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 -0.4 -0.4 -0.7 -0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.5 -0.9 -0.4 +0.7
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 -0.5 +0.0 -0.6
no phage P4L5 -0.3 -0.2 +0.0 -0.6 -0.5
phage AgroPhage_A01 +0.0 -0.6 -0.5 -0.5 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.4 -0.4 -0.7 -0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.1 -0.2 -1.1 -0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 -0.2 -1.0 -0.4
phage AgroPhage_D10 -0.5 -0.7 +0.1 +0.2 -0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.4 -0.2 -0.3 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.6 -0.3 +0.4 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.5 -0.5 -0.4 +0.7
phage AgroPhage_C10 +0.1 +0.3 -0.0 -0.7 -0.5
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.0 -0.2 +0.5 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 +0.3 -0.4 +0.3 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -0.4 +0.7 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 +0.5 -0.7 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.4 -0.1 -0.6 +0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.8 +0.1 -0.7 +0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.7 +0.1 -0.2 -0.4 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.2 +0.0 +0.6 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.3 +0.7 +0.4 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.3 +0.5 -0.0 +0.7
nitrogen source DL-2-Aminobutyric (N) +0.5 -0.1 +0.1 +0.5 +0.8
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