Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4340 and Atu4341 are separated by 54 nucleotidesAtu4341 and Atu4342 are separated by 93 nucleotidesAtu4342 and Atu4343 are separated by 65 nucleotidesAtu4343 and Atu4344 are separated by 220 nucleotides Atu4340: Atu4340 - hypothetical protein, at 1,472,385 to 1,473,779 Atu4340 Atu4341: Atu4341 - hypothetical protein, at 1,473,834 to 1,475,315 Atu4341 Atu4342: Atu4342 - hypothetical protein, at 1,475,409 to 1,475,918 Atu4342 Atu4343: Atu4343 - hypothetical protein, at 1,475,984 to 1,477,039 Atu4343 Atu4344: Atu4344 - ATP-dependent Clp protease, ATP-binding subunit, at 1,477,260 to 1,479,938 Atu4344
Group Condition Atu4340 Atu4341 Atu4342 Atu4343 Atu4344
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.5 -1.7 -0.6 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.6 -0.4 -0.5 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.7 -1.4 -0.2 +0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.5 -1.5 -0.7 +0.4
carbon source sarcosine (C) -0.5 -0.8 -0.5 -0.6 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.5 -0.5 -0.7 -0.3 -0.1
carbon source L-(+)-Erythrulose (C) -0.6 -0.7 -0.2 -0.5 -0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.1 -1.4 -0.2 -0.1
phage AgroPhage_C04 +0.5 -0.2 -1.6 -0.2 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.4 -0.1 -0.6 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.8 -0.5 +0.1 -0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -0.4 -0.6 -0.3 -0.1
stress R2A with Calcium Chloride Dihydrate 87.5 mM +0.1 +0.0 -0.3 +0.0 -1.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.4 -0.8 +0.5 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.4 -0.8 +0.4 -0.4
phage AgroPhage_C10 +0.1 -0.1 -1.2 +0.1 +0.3
in planta Bethi_Library_OD0.1 +0.1 -0.2 -1.0 +0.4 -0.0
Atjh14 -0.2 -0.4 -1.0 +0.7 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -0.5 +0.6 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.4 -0.5 -0.1 +0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 +0.4 -0.8 +0.3 +0.2
stress R2A with Tetracycline 0.002 mM +0.2 +0.4 -0.8 -0.0 +0.4
no phage P2L5 +0.1 +0.2 -0.6 +0.5 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 +0.1 +0.2 +0.9 -0.6
stress Chloramphenicol 12.5 ug/mL +0.1 +0.5 +0.7 -0.1 -0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.7 +0.7 -0.1 +0.2
nitrogen source DL-2-Aminobutyric (N) +0.1 +0.6 +0.1 -0.3 +0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.0 +0.9 +0.5 -0.2
stress Erythromycin 12.5 ug/mL +0.6 +0.4 +0.3 +0.4 +0.3
stress Erythromycin 12.5 ug/mL +0.6 +0.3 +0.3 +0.8 +0.5
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