Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4300 and Atu4301 are separated by 311 nucleotidesAtu4301 and Atu4302 are separated by 77 nucleotidesAtu4302 and Atu4303 are separated by 136 nucleotidesAtu4303 and Atu4304 are separated by 24 nucleotides Atu4300: Atu4300 - two component response regulator, at 1,424,686 to 1,425,321 Atu4300 Atu4301: Atu4301 - hypothetical protein, at 1,425,633 to 1,426,391 Atu4301 Atu4302: Atu4302 - hypothetical protein, at 1,426,469 to 1,426,882 Atu4302 Atu4303: Atu4303 - hypothetical protein, at 1,427,019 to 1,427,450 Atu4303 Atu4304: Atu4304 - hypothetical protein, at 1,427,475 to 1,428,965 Atu4304
Group Condition Atu4300 Atu4301 Atu4302 Atu4303 Atu4304
phage AgroPhage_F03 -0.4 -0.5 -0.3 -0.4 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.3 -0.3 -0.4 +0.1
phage AgroPhage_A07 -0.3 -0.1 -0.0 -0.6 -0.1
carbon source D-Sorbitol (C) -0.2 -0.1 -0.5 -0.2 -0.1
lb_sorghum x54 243 LB_Sorghum X54 243 -0.1 -0.4 -0.6 +0.0 +0.0
lb_sorghum f72 f505 LB_Sorghum F72 F505 -0.3 -0.3 -0.3 +0.1 -0.0
phage AgroPhage_H04 -0.4 -0.3 -0.3 +0.1 +0.1
no phage P1L4 +0.1 +0.1 -0.3 -0.6 -0.1
phage AgroPhage_C10 +0.1 +0.1 -0.4 -0.2 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 +0.4 -0.4 -0.0
phage AgroPhage_B07 -0.2 -0.3 -0.5 +0.3 +0.1
phage AgroPhage_H10 -0.3 -0.1 -0.4 +0.3 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 -0.4 +0.4 -0.1
nophagecontrol No phage control -0.2 +0.2 +0.2 -0.8 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.4 +0.3 -0.6 -0.1
phage AgroPhage_E10 -0.1 -0.3 -0.4 +0.5 +0.0
carbon source methyl-alpha-D-xylopyranoside (C) -0.3 -0.1 -0.2 +0.6 -0.0
phage phage 95.1 +0.2 +0.3 -0.2 -0.4 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 -0.5 +0.2 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 -0.4 +0.3 +0.5
no phage P2L5 +0.3 -0.1 -0.2 +0.5 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.5 -0.3 +0.4 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 -0.2 +0.1 +0.2 +0.7 +0.0
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.0 -0.0 +0.3 +0.6 +0.2
nitrogen source DL-2-Aminobutyric (N) -0.0 -0.1 +0.5 +0.8 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.1 +0.3 +0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.4 -0.1 +0.8 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.0 +0.3 +0.4 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.2 +0.4 +0.3 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 +0.5 +0.4 +0.9 +0.1
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