Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4299 and Atu4300 are separated by 201 nucleotidesAtu4300 and Atu4301 are separated by 311 nucleotidesAtu4301 and Atu4302 are separated by 77 nucleotidesAtu4302 and Atu4303 are separated by 136 nucleotides Atu4299: Atu4299 - hypothetical protein, at 1,423,945 to 1,424,484 Atu4299 Atu4300: Atu4300 - two component response regulator, at 1,424,686 to 1,425,321 Atu4300 Atu4301: Atu4301 - hypothetical protein, at 1,425,633 to 1,426,391 Atu4301 Atu4302: Atu4302 - hypothetical protein, at 1,426,469 to 1,426,882 Atu4302 Atu4303: Atu4303 - hypothetical protein, at 1,427,019 to 1,427,450 Atu4303
Group Condition Atu4299 Atu4300 Atu4301 Atu4302 Atu4303
phage AgroPhage_H04 -1.3 -0.4 -0.3 -0.3 +0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 -0.6 -0.3 -0.3 -0.4
phage AgroPhage_F03 -0.1 -0.4 -0.5 -0.3 -0.4
phage phage 100.2 -0.6 +0.0 -0.5 -0.4 -0.1
carbon source D-Sorbitol (C) -0.5 -0.2 -0.1 -0.5 -0.2
lb_sorghum x54 243 LB_Sorghum X54 243 -0.4 -0.1 -0.4 -0.6 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.3 -0.2 +0.2 -0.4 +0.3
nophagecontrol No phage control -0.8 -0.2 +0.2 +0.2 -0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 -0.3 -0.1 -0.4 +0.4
lb_tobacco_leaf LB_Tobacco_Leaf -0.5 -0.3 +0.1 -0.3 -0.2
phage AgroPhage_B07 -0.5 -0.2 -0.3 -0.5 +0.3
phage AgroPhage_D10 -0.5 -0.5 +0.0 -0.2 +0.2
phage AgroPhage_H10 -0.3 -0.3 -0.1 -0.4 +0.3
phage AgroPhage_A07 +0.6 -0.3 -0.1 -0.0 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.0 -0.2 -0.0 +0.4 +0.3
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 -0.3 +0.4 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.6 -0.1 +0.1 -0.2 +0.5
phage AgroPhage_E10 +0.1 -0.1 -0.3 -0.4 +0.5
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.3 +0.4 +0.3 -0.6
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.3 +0.2 +0.4 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.5 -0.0 +0.3 +0.4
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 +0.5 -0.3 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.7 +0.4 +0.3 -0.5 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 +0.4 +0.1 -0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 +0.3 +0.2 -0.1 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 +0.7 +0.2 +0.4 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.9 +0.5 +0.5 +0.4 +0.9
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.1 +0.2 +0.1 +0.5
nitrogen source DL-2-Aminobutyric (N) +0.3 -0.0 -0.1 +0.5 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 -0.1 +0.4 -0.1 +0.8
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