Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4287 and Atu4288 are separated by 188 nucleotidesAtu4288 and Atu4289 are separated by 25 nucleotidesAtu4289 and Atu4290 are separated by 39 nucleotidesAtu4290 and Atu4291 are separated by 24 nucleotides Atu4287: Atu4287 - NonF-like protein, at 1,410,846 to 1,411,538 Atu4287 Atu4288: Atu4288 - LysR family transcriptional regulator, at 1,411,727 to 1,412,626 Atu4288 Atu4289: Atu4289 - alcohol dehydrogenase, at 1,412,652 to 1,413,590 Atu4289 Atu4290: Atu4290 - hypothetical protein, at 1,413,630 to 1,413,830 Atu4290 Atu4291: Atu4291 - LysR family transcriptional regulator, at 1,413,855 to 1,414,763 Atu4291
Group Condition Atu4287 Atu4288 Atu4289 Atu4290 Atu4291
Atjh14 -0.1 -0.2 -0.4 -0.9 -0.1
benthi_leaf_lb with c58c1od0.075 Benthi_leaf_C58C1OD0.075 +0.0 -0.1 -0.1 -1.3 -0.1
phage AgroPhage_B07 -0.3 +0.1 +0.3 -1.5 -0.0
phage AgroPhage_D10 -0.5 +0.2 -0.0 -0.6 -0.5
nitrogen source L-pyroglutamic (N) +0.1 +0.1 -0.2 -1.1 +0.0
lb_cucumber_cotlyden LB_cucumber_cotlyden -0.1 +0.3 +0.1 -1.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.6 +0.3 -0.8 +0.2
stress R2A with bromate 5 mM +0.2 -0.0 +0.1 -1.1 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.0 +0.3 -1.4 +0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.0 +0.5 -0.7 -0.3
lb_tobacco_leaf LB_Tobacco_Leaf +0.2 -0.0 +0.1 -1.0 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 +0.4 -0.5 +0.1
phage AgroPhage_E04 -0.8 +0.3 +0.0 +0.5 -0.0
stress Chloramphenicol 12.5 ug/mL +0.5 +0.2 +0.2 -0.9 +0.0
nitrogen source DL-2-Aminobutyric (N) +0.9 +0.2 -0.1 -0.7 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.3 +0.5 -0.4 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.3 +0.1 -0.4 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 +0.4 +0.2 +0.4 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.3 +0.0 +0.9 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.1 +0.2 +1.4 -0.6
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.9 -0.1 -0.5 +0.5
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 +0.0 +0.7 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.4 -0.0 +0.9 -0.2
in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 +0.1 +1.3 +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.0 +0.2 +1.0 +0.3
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.3 +0.2 +0.8 -0.2
phage AgroPhage_E10 +0.4 +0.4 +0.3 +0.8 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.1 +0.2 +1.4 -0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.4 +0.2 +0.1 +0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.1 +0.1 +0.7 +0.9
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