Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4281 and Atu4282 overlap by 4 nucleotidesAtu4282 and Atu4283 overlap by 4 nucleotidesAtu4283 and Atu4284 are separated by 30 nucleotidesAtu4284 and Atu4285 are separated by 93 nucleotides Atu4281: Atu4281 - amino acid ABC transporter permease, at 1,405,920 to 1,406,627 Atu4281 Atu4282: Atu4282 - amino acid ABC transporter permease, at 1,406,624 to 1,407,382 Atu4282 Atu4283: Atu4283 - ABC transporter permease, at 1,407,379 to 1,408,143 Atu4283 Atu4284: Atu4284 - amino acid ABC transporter substrate-binding protein, at 1,408,174 to 1,409,010 Atu4284 Atu4285: Atu4285 - S-adenosylmethionine:2-demethylmenaquinone methyltransferase, at 1,409,104 to 1,409,778 Atu4285
Group Condition Atu4281 Atu4282 Atu4283 Atu4284 Atu4285
phage AgroPhage_F04 -0.3 -0.2 -0.5 +0.1 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 -0.1 -0.4 -0.3 -0.3
Atjh2 -0.1 +0.3 -0.4 +0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.4 -0.2 -0.1 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.2 -0.3 +0.1 -0.6
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 -0.3 +0.1 -0.1 -0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.2 -0.0 +0.4 -0.8
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 +0.3 -0.1 -0.6
carbon source D-Saccharic potassium salt (C) +0.1 +0.2 -0.2 +0.2 -0.4
phage AgroPhage_A07 -0.3 +0.5 -0.3 +0.1 -0.1
nitrogen source DL-2-Aminobutyric (N) +0.5 -0.5 -0.1 +0.1 -0.1
stress R2A with Vancomycin 0.009 mM +0.2 -0.2 +0.1 -0.3 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 +0.4 +0.2 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 +0.2 +0.3 +0.3 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.1 +0.3 +0.2 -0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.4 +0.1 +0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 -0.1 -0.2 +0.1 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.4 +0.2 +0.4 -0.0
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.2 +0.3 +0.3 -0.4
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 +0.4 +0.6 +0.4 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.4 -0.1 +0.2 +0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.2 +0.1 +0.4 +0.4 -0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.0 +0.3 +0.4 +0.3 +0.1
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +0.1 +0.2 +0.5 +0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.1 +0.3 +0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.4 +0.5 +0.0
phage AgroPhage_E04 -0.2 +0.2 +0.6 +0.4 +0.2
lb_sorghum_leaf LB_sorghum_leaf +0.3 +0.2 +0.3 +0.2 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.3 +0.3 +0.3 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.5 +0.1 +0.2 +0.4
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