Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4261 and Atu4262 are separated by 9 nucleotidesAtu4262 and Atu4263 are separated by 117 nucleotidesAtu4263 and Atu4264 are separated by 93 nucleotidesAtu4264 and Atu4265 are separated by 91 nucleotides Atu4261: Atu4261 - ABC transporter permease, at 1,387,390 to 1,388,211 Atu4261 Atu4262: Atu4262 - ABC transporter substrate binding protein, at 1,388,221 to 1,389,150 Atu4262 Atu4263: Atu4263 - hypothetical protein, at 1,389,268 to 1,390,365 Atu4263 Atu4264: Atu4264 - LysR family transcriptional regulator, at 1,390,459 to 1,391,355 Atu4264 Atu4265: Atu4265 - hypothetical protein, at 1,391,447 to 1,392,061 Atu4265
Group Condition Atu4261 Atu4262 Atu4263 Atu4264 Atu4265
carbon source trans-aconitic (C) -2.5 -2.2 -2.1 -2.0 -0.2
carbon source trans-aconitic (C) -1.9 -1.8 -1.9 -2.2 +0.0
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.1 -0.0 -0.4 -0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 +0.1 -0.2 -0.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 +0.2 -0.6 -0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 +0.0 -0.7 +0.1
phage AgroPhage_B07 -0.0 -0.2 -0.0 +0.3 -0.8
phage AgroPhage_D04 +0.0 -0.1 +0.3 -0.1 -0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 -0.4 +0.3 +0.1
carbon source Methyl-B-D-galactopyranoside (C) -0.1 +0.1 -0.2 -0.5 +0.2
phage AgroPhage_E10 -0.3 +0.2 +0.3 +0.2 -0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 -0.3 +0.4 -0.1 -0.7
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 +0.1 -0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.0 +0.4 -0.6 -0.3
phage AgroPhage_A05 -0.1 -0.1 +0.0 +0.3 -0.6
phage AgroPhage_C10 +0.2 +0.3 -0.2 -0.3 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.1 +0.3 -0.2 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.1 -0.4 -0.3 +0.3
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.2 -0.6 +0.2 +0.7
nitrogen source DL-2-Aminobutyric (N) -0.1 +0.1 +0.4 +0.1 -0.4
nophagecontrol No phage control -0.1 -0.2 -0.3 +0.4 +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 -0.1 -0.4 +0.2 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.5 +0.3 +0.3 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 -0.3 -0.1 +0.4
lb_sorghum_leaf LB_sorghum_leaf +0.2 +0.3 +0.1 -0.2 +0.3
phage AgroPhage_D10 -0.0 -0.1 +0.3 +0.7 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 +0.2 +0.2 +0.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.2 +0.2 -0.1 +1.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.1 +0.2 -0.1 +0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.3 +0.9 -0.0 -0.1
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