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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu4259 and Atu4260 are separated by 285 nucleotides
Atu4260 and Atu4261 overlap by 14 nucleotides
Atu4261 and Atu4262 are separated by 9 nucleotides
Atu4262 and Atu4263 are separated by 117 nucleotides
Atu4259: Atu4259 - oligopeptide ABC transporter substrate-binding protein, at 1,384,746 to 1,386,341
Atu4259
Atu4260: Atu4260 - ABC transporter permease, at 1,386,627 to 1,387,403
Atu4260
Atu4261: Atu4261 - ABC transporter permease, at 1,387,390 to 1,388,211
Atu4261
Atu4262: Atu4262 - ABC transporter substrate binding protein, at 1,388,221 to 1,389,150
Atu4262
Atu4263: Atu4263 - hypothetical protein, at 1,389,268 to 1,390,365
Atu4263
Group
Condition
Atu4259
Atu4260
Atu4261
Atu4262
Atu4263
carbon source
trans-aconitic (C)
+0.0
-2.2
-2.5
-2.2
-2.1
carbon source
trans-aconitic (C)
-0.1
-1.8
-1.9
-1.8
-1.9
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.3
+0.0
-0.3
-0.3
-0.4
phage
AgroPhage_C04
-0.0
-0.4
-0.4
-0.1
+0.1
lb_ntabacum_leaf
LB_Ntabacum_leaf
-0.4
-0.2
+0.1
-0.1
-0.3
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.0
+0.1
-0.1
-0.2
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.3
-0.2
-0.1
+0.2
lb_tomato_leaf
LB_Tomato_Leaf
-0.3
-0.1
+0.2
-0.2
-0.2
lb_cucumber_cotlyden
LB_cucumber_cotlyden
-0.5
-0.2
+0.0
+0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.0
+0.1
-0.1
-0.4
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.2
-0.3
-0.3
+0.0
+0.2
phage
AgroPhage_E10
-0.0
-0.6
-0.3
+0.2
+0.3
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.2
-0.1
+0.1
-0.5
+0.3
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.3
-0.1
-0.1
-0.4
+0.1
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.0
+0.2
-0.2
-0.4
+0.2
phage
AgroPhage_D04
+0.3
-0.3
+0.0
-0.1
+0.3
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.0
+0.1
-0.2
-0.2
+0.5
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.1
-0.1
+0.3
+0.4
-0.2
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.0
+0.0
+0.2
-0.3
+0.4
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.1
+0.6
-0.1
-0.3
+0.1
carbon source
D-Saccharic potassium salt (C)
+0.3
+0.1
+0.2
+0.2
-0.3
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
+0.1
+0.3
+0.3
+0.1
-0.3
in planta
Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days
-0.1
+0.3
-0.2
+0.3
+0.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.1
+0.5
+0.2
+0.2
-0.0
in planta
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.2
+0.3
+0.2
+0.1
+0.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.1
+0.5
+0.2
+0.2
+0.1
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.3
+0.2
+0.2
+0.1
+0.2
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.3
+0.3
+0.3
+0.1
+0.2
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.2
+0.3
+0.4
+0.4
+0.0
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.2
+0.0
+0.3
+0.3
+0.9
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