Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4257 and Atu4258 are separated by 106 nucleotidesAtu4258 and Atu4259 are separated by 54 nucleotidesAtu4259 and Atu4260 are separated by 285 nucleotidesAtu4260 and Atu4261 overlap by 14 nucleotides Atu4257: Atu4257 - oligopeptide ABC transporter permease, at 1,382,645 to 1,383,661 Atu4257 Atu4258: Atu4258 - oligopeptide ABC transporter permease, at 1,383,768 to 1,384,691 Atu4258 Atu4259: Atu4259 - oligopeptide ABC transporter substrate-binding protein, at 1,384,746 to 1,386,341 Atu4259 Atu4260: Atu4260 - ABC transporter permease, at 1,386,627 to 1,387,403 Atu4260 Atu4261: Atu4261 - ABC transporter permease, at 1,387,390 to 1,388,211 Atu4261
Group Condition Atu4257 Atu4258 Atu4259 Atu4260 Atu4261
carbon source trans-aconitic (C) +0.1 -0.1 +0.0 -2.2 -2.5
carbon source trans-aconitic (C) +0.1 -0.0 -0.1 -1.8 -1.9
phage AgroPhage_E10 -0.4 -0.0 -0.0 -0.6 -0.3
phage AgroPhage_C04 -0.1 -0.4 -0.0 -0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.3 -0.2 -0.3 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.4 -0.3 -0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.4 -0.5 -0.2 -0.1 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.4 -0.3 -0.1 -0.1 -0.2
lb_lettuce_leaf LB_Lettuce_Leaf -0.4 -0.4 -0.4 -0.1 -0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.3 -0.2 -0.0 -0.1
lb_cucumber_cotlyden LB_cucumber_cotlyden -0.2 -0.4 -0.5 -0.2 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.3 -0.5 -0.3 -0.0 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.3 -0.3 -0.2 -0.1 -0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.4 -0.4 -0.1 +0.0 -0.1
lb_ntabacum_leaf LB_Ntabacum_leaf -0.4 -0.3 -0.4 -0.1 +0.1
lb_ntabacum_leaf LB_Ntabacum_leaf -0.3 -0.2 -0.4 -0.2 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.5 -0.1 +0.1 +0.0
lb_tobacco_leaf LB_Tobacco_Leaf -0.4 -0.3 -0.2 +0.0 -0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 -0.4 -0.2 +0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.5 -0.3 -0.2 -0.0
lb_tomato_leaf LB_Tomato_Leaf -0.2 -0.3 -0.3 -0.1 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.3 -0.3 -0.2 -0.1 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 -0.3 -0.2 -0.0 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 -0.3 -0.3 +0.2 +0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.0 -0.1 -0.5 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.1 +0.1 +0.3 +0.3
carbon source Rhamnogalacturonan - from potato (C) +0.2 +0.3 +0.2 +0.3 -0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.1 +0.2 +0.3 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.0 +0.1 +0.5 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 +0.2 +0.2 +0.3 +0.4
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