Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4237 and Atu4238 are separated by 11 nucleotidesAtu4238 and Atu4239 overlap by 4 nucleotidesAtu4239 and Atu4240 overlap by 4 nucleotidesAtu4240 and Atu4241 are separated by 4 nucleotides Atu4237: Atu4237 - hypothetical protein, at 1,362,176 to 1,362,778 Atu4237 Atu4238: Atu4238 - hydrolase, at 1,362,790 to 1,363,635 Atu4238 Atu4239: Atu4239 - flavoprotein oxidoreductase, at 1,363,632 to 1,364,570 Atu4239 Atu4240: Atu4240 - alkanal monooxygenase subunit alpha, at 1,364,567 to 1,365,607 Atu4240 Atu4241: Atu4241 - aldehyde dehydrogenase, at 1,365,612 to 1,367,078 Atu4241
Group Condition Atu4237 Atu4238 Atu4239 Atu4240 Atu4241
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.0 -0.9 +0.1 +0.3 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.4 -0.5 +0.2 -0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.7 -0.7 -0.8 +0.1 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 +0.4 -0.6 +0.2 -0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.5 -0.5 +0.3 +0.3
phage AgroPhage_C04 +0.7 -0.8 -0.1 -0.0 -0.1
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.1 +0.5 -0.7 +0.4
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.5 -0.0 +0.1 -0.3
stress Chloramphenicol 12.5 ug/mL -0.4 +0.3 -0.2 +0.4 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.7 +0.7 +0.2 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.5 -0.3 +0.5 +0.2
Atjh14 +0.3 -0.6 +0.3 +0.6 -0.3
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 +0.1 +0.3 -0.1 +0.7
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 -0.2 -0.5 +0.4 +0.5
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.2 -0.3 +0.1 -0.3
phage AgroPhage_A07 +0.5 -0.2 +0.3 -0.3 +0.1
carbon source Rhamnogalacturonan - from potato (C) -0.5 +0.5 +0.3 +0.1 +0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.6 +0.0 +0.6 +0.2
stress R2A with Vancomycin 0.009 mM +1.3 -0.4 -0.4 +0.2 -0.0
no phage P2L5 +0.5 -0.3 +0.3 +0.5 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.3 +0.1 -0.4 -0.2 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 +0.8 -0.1 -0.2 +0.1
carbon source gluconate (C) +1.7 +0.3 -0.1 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.1 +0.4 +0.4 +0.5
nitrogen source DL-2-Aminobutyric (N) +1.4 +0.1 +0.3 +0.1 -0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 +0.6 -0.1 +0.5 +0.1
phage AgroPhage_E10 +0.5 +0.1 +0.3 +0.5 +0.5
carbon source gluconate (C) +1.8 +0.5 +0.1 -0.2 +0.1
carbon source D-Saccharic potassium salt (C) +3.2 -0.3 +0.1 +0.0 -0.1
carbon source D-Saccharic potassium salt (C) +3.4 +0.1 +0.0 -0.3 -0.0
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