Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4232 and Atu4233 are separated by 183 nucleotidesAtu4233 and Atu4234 are separated by 173 nucleotidesAtu4234 and Atu4235 are separated by 29 nucleotidesAtu4235 and Atu4236 are separated by 80 nucleotides Atu4232: Atu4232 - GntR family transcriptional regulator, at 1,357,532 to 1,358,227 Atu4232 Atu4233: Atu4233 - amino acid ABC transporter substrate-binding protein, at 1,358,411 to 1,359,271 Atu4233 Atu4234: Atu4234 - amino acid ABC transporter permease, at 1,359,445 to 1,360,038 Atu4234 Atu4235: Atu4235 - amino acid ABC transporter ATPase/permease, at 1,360,068 to 1,360,799 Atu4235 Atu4236: Atu4236 - dehydrogenase, at 1,360,880 to 1,362,058 Atu4236
Group Condition Atu4232 Atu4233 Atu4234 Atu4235 Atu4236
carbon source D-Galacturonic Acid (C) -4.3 -0.1 +0.0 -0.0 -0.1
carbon source D-Saccharic potassium salt (C) -3.2 -0.1 -0.2 -0.2 +0.2
carbon source D-Saccharic potassium salt (C) -2.5 -0.0 -0.3 +0.2 -0.0
carbon source D-Galacturonic Acid (C) -2.8 +0.1 +0.1 -0.0 +0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.3 +0.1 +0.0 +0.2 +0.3
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.8 +0.1 -0.3 +0.2 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.8 +0.2 +0.1 +0.2 -0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.7 +0.5 -0.0 -0.1 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.6 +0.2 -0.5 +0.4 +0.2
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.6 -0.1 +0.5 +0.2 -0.1
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.7 -0.3 +0.9 -0.3 +0.4
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.5 -0.0 +0.7 +0.2 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.4 +0.7 +0.4 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.1 +0.2 +1.2 -0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.2 -0.3 -0.4 +0.6 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.0 +0.7 +0.9 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.3 -0.2 -0.4 -0.2 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.4 -0.2 -0.6 -0.1 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.0 +0.1 -0.2 +0.1 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.9 -0.1 -0.1 -0.0 +0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.2 -0.2 -0.1 +0.1 -0.0
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.2 -0.0 -0.2 -0.0 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.2 -0.1 +0.0 +0.0 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.2 +0.2 +0.0 +0.1 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.3 +0.0 +0.1 +0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +2.2 +0.0 +0.2 +0.2 +0.2
nitrogen source 4-Aminobutyric (N) +4.3 -0.0 +0.0 -0.1 -0.0
nitrogen source 4-Aminobutyric (N) +4.3 -0.1 +0.1 -0.1 +0.1
carbon source 4-Aminobutyric (C) +5.1 -0.1 +0.3 +0.1 +0.1
carbon source 4-Aminobutyric (C) +5.4 -0.2 +0.2 +0.0 +0.0
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