Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4226 and Atu4227 are separated by 96 nucleotidesAtu4227 and Atu4228 are separated by 37 nucleotidesAtu4228 and Atu4229 are separated by 16 nucleotidesAtu4229 and Atu4230 are separated by 85 nucleotides Atu4226: Atu4226 - transcriptional regulator, at 1,351,314 to 1,351,940 Atu4226 Atu4227: Atu4227 - amidophosphoribosyltransferase, at 1,352,037 to 1,352,942 Atu4227 Atu4228: Atu4228 - formyl-methanofuran dehydrogenase, at 1,352,980 to 1,353,666 Atu4228 Atu4229: Atu4229 - glutamate synthase large subunit, at 1,353,683 to 1,355,011 Atu4229 Atu4230: Atu4230 - glutamine synthetase, at 1,355,097 to 1,356,404 Atu4230
Group Condition Atu4226 Atu4227 Atu4228 Atu4229 Atu4230
stress R2A with m-arsenite 0.8 mM -1.6 -0.2 +0.2 +0.1 -0.0
stress R2A with m-arsenite 0.8 mM -1.5 +0.2 -0.1 +0.0 -0.1
carbon source L-ascorbate (C) -0.8 +0.1 -0.3 -0.0 -0.3
carbon source D-Saccharic potassium salt (C) -1.4 +0.2 -0.1 +0.0 +0.0
carbon source D-Saccharic potassium salt (C) -1.4 +0.1 +0.1 +0.1 -0.2
nitrogen source L-Phenylalanine (N) -1.2 -0.1 -0.2 +0.3 +0.0
nitrogen source L-Phenylalanine (N) -1.2 +0.0 +0.1 +0.2 +0.2
phage AgroPhage_C10 -0.9 +0.2 -0.1 -0.1 +0.3
phage AgroPhage_D04 +0.6 -0.0 -1.0 -0.0 -0.1
stress R2A with Tetracycline 0.002 mM -0.7 +0.2 +0.3 -0.0 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -0.2 -0.6 +0.5 +0.2
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.4 +0.2 -0.2 -0.3
lb_ntabacum_leaf LB_Ntabacum_leaf -0.9 +0.0 +0.1 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.2 -0.5 +0.3 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 +0.1 +0.1 +0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 +0.3 -0.3 +0.3 +0.4
stress R2A with Vancomycin 0.009 mM +0.2 -0.2 +0.2 +0.5 -0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.3 -0.4 +0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 -0.0 +0.2 +0.3 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 +0.3 +0.3 +0.3
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 +0.6 -0.2 -0.1 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.4 +0.7 -0.2 +0.5
lb_arabidopsis_leaf LB_arabidopsis_leaf -0.3 +0.3 +0.3 +0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 +0.5 -0.2 +0.4 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.1 +0.2 +0.5 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.2 +0.7 +0.3 +0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 -0.0 +0.6 +0.7 -0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.2 +0.2 +0.4 +0.2 +0.8
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.1 +0.2 +0.8 +0.5 +0.3
carbon source Ferulic Acid (C) +1.3 -0.0 +0.4 +0.1 +0.1
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