Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4223 and Atu4224 are separated by 24 nucleotidesAtu4224 and Atu4225 are separated by 90 nucleotidesAtu4225 and Atu4226 are separated by 87 nucleotidesAtu4226 and Atu4227 are separated by 96 nucleotides Atu4223: Atu4223 - sarcosine oxidase delta subunit, at 1,348,611 to 1,348,886 Atu4223 Atu4224: Atu4224 - sarcosine oxidase beta subunit, at 1,348,911 to 1,350,161 Atu4224 Atu4225: Atu4225 - AraC family transcriptional regulator, at 1,350,252 to 1,351,226 Atu4225 Atu4226: Atu4226 - transcriptional regulator, at 1,351,314 to 1,351,940 Atu4226 Atu4227: Atu4227 - amidophosphoribosyltransferase, at 1,352,037 to 1,352,942 Atu4227
Group Condition Atu4223 Atu4224 Atu4225 Atu4226 Atu4227
nophagecontrol No phage control -2.3 -0.2 -0.4 +0.1 +0.2
carbon source D-Saccharic potassium salt (C) -0.6 -0.2 -0.1 -1.4 +0.1
phage AgroPhage_E10 -1.2 -0.3 -0.8 +0.1 +0.1
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -2.2 +0.2 -0.2 +0.1 +0.2
stress R2A with m-arsenite 0.8 mM +0.2 -0.2 -0.1 -1.6 -0.2
phage phage 100.3 -1.6 +0.1 +0.1 -0.3 -0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.1 -0.0 -0.1 +0.0 +0.4
carbon source Xylitol (C) -1.7 +0.0 +0.0 -0.2 -0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.4 -0.1 +0.2 -0.3 -0.2
phage AgroPhage_D04 -1.2 -0.1 -1.1 +0.6 -0.0
phage AgroPhage_C04 -1.2 -0.6 -0.3 +0.4 -0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.3 -0.4 +0.2 -0.3 +0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.3 -0.1 +0.3 -0.2 -0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 +0.4 -0.2 -0.4 +0.2
stress R2A with Vancomycin 0.009 mM -1.3 -0.2 +0.4 -0.1 -0.0
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.9 +0.3 -0.6 -0.2 +0.3
carbon source D-Saccharic potassium salt (C) +0.2 +0.0 -0.1 -1.4 +0.2
stress R2A with m-arsenite 0.8 mM +0.3 -0.1 +0.1 -1.5 +0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.7 +0.3 +0.3 +0.2 +0.2
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 +0.4 -0.1 -0.1 +0.3
phage AgroPhage_C10 +0.5 +0.1 -0.6 -0.9 +0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 +0.1 +0.5 -0.1 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 +1.0 -0.3 -0.5 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.1 -0.1 +0.3 -0.1 -0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +1.1 +0.2 +0.1 -0.6 +0.0
nitrogen source DL-2-Aminobutyric (N) +1.4 -0.3 -0.4 +0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.3 -0.1 +0.1 -0.3 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 +0.3 +0.6 -0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.7 +0.3 +0.2 -0.3 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +4.1 +0.1 +0.3 -0.4 -0.2
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