Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4220 and Atu4221 are separated by 23 nucleotidesAtu4221 and Atu4222 overlap by 8 nucleotidesAtu4222 and Atu4223 overlap by 4 nucleotidesAtu4223 and Atu4224 are separated by 24 nucleotides Atu4220: Atu4220 - short-chain dehydrogenase, at 1,344,211 to 1,345,086 Atu4220 Atu4221: Atu4221 - hypothetical protein, at 1,345,110 to 1,345,658 Atu4221 Atu4222: Atu4222 - sarcosine oxidase alpha subunit, at 1,345,651 to 1,348,614 Atu4222 Atu4223: Atu4223 - sarcosine oxidase delta subunit, at 1,348,611 to 1,348,886 Atu4223 Atu4224: Atu4224 - sarcosine oxidase beta subunit, at 1,348,911 to 1,350,161 Atu4224
Group Condition Atu4220 Atu4221 Atu4222 Atu4223 Atu4224
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 +0.2 -0.0 -2.2 +0.2
nophagecontrol No phage control +0.2 -0.0 +0.1 -2.3 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.5 -0.2 +0.1 -1.3 -0.1
phage AgroPhage_C04 -0.2 -0.1 -0.0 -1.2 -0.6
phage phage 100.3 +0.0 -0.1 -0.1 -1.6 +0.1
phage AgroPhage_E10 +0.1 -0.3 -0.0 -1.2 -0.3
stress R2A with Vancomycin 0.009 mM -0.0 -0.2 +0.0 -1.3 -0.2
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.0 -0.0 -0.1 -1.7 +0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.4 +0.2 -2.1 -0.0
phage Phage 100.3 + bacteria -0.3 -0.1 +0.1 -1.2 +0.1
carbon source Xylitol (C) +0.1 +0.3 +0.0 -1.7 +0.0
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.2 +0.5 -0.2 -1.3 -0.4
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.3 -0.1 -1.4 -0.1
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.2 -0.0 +0.3 -1.1 -0.0
phage AgroPhage_B07 +0.1 +0.1 +0.1 -0.8 -0.6
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.1 +0.0 -0.2 -1.2 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +0.3 +0.0 -1.4 -0.1
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.4 -0.1 -0.9 +0.3
phage AgroPhage_E04 +0.5 -0.2 +0.0 -0.7 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.5 +0.2 -1.1 +0.3
stress R2A with selenate 630 mM +0.2 +0.3 -0.0 -1.2 +0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.0 +0.6 -0.1 -0.8 +0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 +0.0 +0.2 -1.2 +0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.3 +0.5 -0.1 +0.5 -0.3
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.1 -0.3 -0.0 -0.4 +1.0
nitrogen source DL-2-Aminobutyric (N) -0.4 +0.1 -0.2 +1.4 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 +0.1 +0.1 +1.3 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.0 +0.2 +1.7 +0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.1 +0.2 +0.1 +1.1 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.1 +0.1 +4.1 +0.1
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