Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4217 and Atu4218 are separated by 97 nucleotidesAtu4218 and Atu4219 overlap by 1 nucleotidesAtu4219 and Atu4220 are separated by 29 nucleotidesAtu4220 and Atu4221 are separated by 23 nucleotides Atu4217: Atu4217 - TetR family transcriptional regulator, at 1,339,277 to 1,339,864 Atu4217 Atu4218: Atu4218 - multidrug efflux protein, at 1,339,962 to 1,341,071 Atu4218 Atu4219: Atu4219 - cation efflux system protein, at 1,341,071 to 1,344,181 Atu4219 Atu4220: Atu4220 - short-chain dehydrogenase, at 1,344,211 to 1,345,086 Atu4220 Atu4221: Atu4221 - hypothetical protein, at 1,345,110 to 1,345,658 Atu4221
Group Condition Atu4217 Atu4218 Atu4219 Atu4220 Atu4221
stress methyl jasmonate 5 mM -5.3 +0.0 +0.0 +0.1 +0.0
stress methyl jasmonate 5 mM -5.3 -0.0 +0.0 +0.2 +0.0
stress R2A with hypochlorite 6.25 mM -5.1 +0.1 +0.1 -0.2 +0.2
stress R2A with Novobiocin 0.002 mM -4.5 +0.0 -0.1 -0.1 -0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -4.3 -0.2 -0.1 +0.1 -0.0
stress R2A with Nalidixic 0.02 mM -4.4 +0.0 +0.1 -0.3 +0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -4.4 -0.0 +0.0 +0.1 -0.0
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -4.2 -0.2 -0.1 +0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -4.2 +0.0 +0.2 +0.1 -0.1
stress R2A with Nalidixic 0.02 mM -3.8 -0.1 +0.0 +0.0 -0.2
carbon source Ethyl benzoate (C) -4.3 +0.1 +0.1 +0.1 +0.1
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -4.2 -0.1 +0.1 +0.0 +0.3
carbon source p-Coumaric (C) -4.1 +0.2 +0.1 -0.1 +0.0
stress R2A with Lomefloxacin 0.0002 mM -3.8 -0.0 +0.1 -0.0 -0.1
stress R2A with Bacitracin 0.6 mM -3.8 +0.1 +0.1 +0.0 -0.3
stress R2A with Fusidic 0.002 mM -3.7 -0.0 +0.1 -0.0 -0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -4.0 +0.0 -0.1 +0.2 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.6 +0.0 -0.0 -0.2 +0.2
carbon source Ferulic Acid (C) -4.1 +0.0 +0.1 +0.1 +0.3
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -4.0 +0.1 -0.1 +0.5 +0.1
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.0 -0.1 -0.4 +0.1 -0.0
stress Nerol 1.25 mM -3.6 -0.0 +0.1 +0.2 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -3.1 -0.2 +0.1 -0.1 -0.1
lb control LB control -4.0 +0.0 +0.2 +0.2 +0.3
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.8 +0.2 +0.3 -0.1 +0.2
stress R2A with Chloride 700 mM -3.2 -0.1 -0.1 +0.1 +0.1
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.7 +0.1 -0.1 +0.2 +0.4
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -3.0 -0.1 -0.0 +0.2 +0.1
nophagecontrol No phage control -3.3 -0.0 +0.2 +0.1 +0.2
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.8 -0.1 -0.3 +0.4 +0.4
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