Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4187 and Atu4189 are separated by 324 nucleotidesAtu4189 and Atu4190 are separated by 31 nucleotidesAtu4190 and Atu4191 are separated by 43 nucleotidesAtu4191 and Atu4192 are separated by 303 nucleotides Atu4187: Atu4187 - tRNA-Met, at 1,310,430 to 1,310,506 Atu4187 Atu4189: Atu4189 - dihydropicolinate synthase, at 1,310,831 to 1,311,727 Atu4189 Atu4190: Atu4190 - calcium-binding protein, regucalcin, at 1,311,759 to 1,312,640 Atu4190 Atu4191: Atu4191 - GntR family transcriptional regulator, at 1,312,684 to 1,313,415 Atu4191 Atu4192: Atu4192 - oligopeptide ABC transporter substrate-binding protein, at 1,313,719 to 1,315,668 Atu4192
Group Condition Atu4187 Atu4189 Atu4190 Atu4191 Atu4192
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -3.7 -0.7 +0.1 +0.1 +0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -2.5 -0.4 -0.2 -0.2 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.8 -0.0 -0.1 +0.1 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -2.2 -0.2 -0.1 -0.1 -0.1
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.2 -0.5 -0.3 -0.4 -0.0
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.5 -0.2 -0.1 -0.4 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.5 -0.4 +0.3 -0.6 -0.0
phage phage 95.1 -1.6 -0.2 -0.2 +0.0 -0.0
carbon source Ethyl benzoate (C) -1.5 -0.2 +0.0 -0.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.0 -0.2 +0.5 -0.2 +0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 -2.0 +0.3 +0.1 +0.2 -0.1
stress Chloramphenicol 12.5 ug/mL -1.5 +0.2 -0.3 +0.2 -0.2
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.4 -0.2 +0.3 +0.1 -0.2
phage AgroPhage_E10 -1.8 +0.2 +0.4 -0.3 +0.3
carbon source D-Saccharic potassium salt (C) -1.5 -0.3 +0.1 +0.4 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.7 +0.1 -0.5 -0.7 -0.2
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 +0.7 +0.2 +0.0 +0.0
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.6 -0.2 +0.2 -1.1 +0.5
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.6 -0.4 +0.3 -0.7 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.9 -0.4 -0.1 -0.6 +0.3
Atjh14 +0.5 -0.3 +0.6 -0.3 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.7 -0.6 +0.2 -0.5 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.0 +0.1 +0.2 -0.7 +0.5
carbon source D-Galacturonic Acid (C) -0.7 -0.8 +1.9 +2.5 -1.4
carbon source D-Galacturonic Acid (C) -0.8 -0.8 +2.0 +2.8 -1.5
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.4 +0.8 +0.3 +0.6 +0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.7 +0.1 +0.3 -0.4 +0.3
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +1.9 -0.0 +0.1 -0.1 +0.2
Atjh2 +0.8 +0.4 +0.7 +0.2 +0.2
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.8 +0.6 +0.3 +0.3 -0.3
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