Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu4176 and Atu4177 are separated by 364 nucleotidesAtu4177 and Atu4178 are separated by 69 nucleotidesAtu4178 and Atu4179 are separated by 168 nucleotidesAtu4179 and Atu4180 are separated by 109 nucleotides Atu4176: Atu4176 - hypothetical protein, at 1,297,793 to 1,298,578 Atu4176 Atu4177: Atu4177 - ATP-dependent Clp protease, ATP-binding subunit, at 1,298,943 to 1,301,567 Atu4177 Atu4178: Atu4178 - hypothetical protein, at 1,301,637 to 1,303,583 Atu4178 Atu4179: Atu4179 - hypothetical protein, at 1,303,752 to 1,304,204 Atu4179 Atu4180: Atu4180 - 16S ribosomal RNA, at 1,304,314 to 1,305,793 Atu4180
Group Condition Atu4176 Atu4177 Atu4178 Atu4179 Atu4180
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.9 -0.4 N.D. -0.7 N.D.
carbon source D-Saccharic potassium salt (C) -1.5 -0.1 N.D. -0.4 N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 -0.6 N.D. -0.6 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.6 N.D. -0.5 N.D.
carbon source Melibiose (C) -1.0 -0.1 N.D. -0.7 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.5 N.D. -0.5 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.8 -0.3 N.D. -0.5 N.D.
carbon source alpha-Lactose (C) -1.3 -0.0 N.D. -0.3 N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 -0.3 N.D. -0.6 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 -0.2 N.D. -0.7 N.D.
carbon source Melibiose (C) -0.9 -0.1 N.D. -0.7 N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 -0.3 N.D. -0.8 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 +0.2 N.D. -1.1 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 +0.1 N.D. -0.8 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -0.5 N.D. -1.1 N.D.
stress Streptomycin 200 ug/mL -1.1 +0.6 N.D. +0.2 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.8 -0.7 N.D. -0.2 N.D.
stress Streptomycin 200 ug/mL -1.0 +0.5 N.D. +0.4 N.D.
stress Timentin 6.25 ug/mL -1.2 +0.2 N.D. +1.1 N.D.
stress Chloramphenicol 12.5 ug/mL +1.3 -0.3 N.D. -0.7 N.D.
stress Timentin 6.25 ug/mL -0.9 +0.4 N.D. +1.0 N.D.
stress Erythromycin 12.5 ug/mL -0.7 -0.0 N.D. +1.3 N.D.
stress Erythromycin 12.5 ug/mL -0.4 -0.1 N.D. +1.1 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 +0.8 +0.3 N.D. -0.5 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0 +0.8 +0.5 N.D. -0.5 N.D.
stress R2A with Vancomycin 0.009 mM -0.4 +0.6 N.D. +0.9 N.D.
stress R2A with Vancomycin 0.009 mM -0.3 +0.5 N.D. +1.0 N.D.
no phage P2L5 +0.7 +0.1 N.D. +0.9 N.D.
stress R2A with Tetracycline 0.002 mM +1.0 -0.1 N.D. +0.9 N.D.
stress Chloramphenicol 12.5 ug/mL +1.7 -0.1 N.D. +0.5 N.D.
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